GXcells

### Your question I have a script that runs comfy without the UI and in order to save some loading time, I put a for loops i nthe image generation...

I only get a weird spherical blob if I input a protein sequence instead of .pdb. AI also have this error during inference "Could not load pretrained MHT weights, skipping...

I cannot find any info anywhere. How can I get the confidence metrics of the predicted structures? DO I have to modify the config to add "use_plddt": True, If yes,...

How to open results?

4

Hi, thanks a lot for NeuralPlexer. Unfortunately, I cannot open the sdf output files in ChimeraX. I get error IndexError: list index out of range File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\sdf\sdf.py", line 276,...

Can we limit the predicted segmentation masks to specific pixels intensities (eg 0, 128, 255)?

2

I am running training on a dataset of immunofluorescence images of cells in which the segmentation masks have 3 values for pixel intensities in the masks (0, 128, 255). 0...

I don't get how we can run predicitions?

7

I don't get how to run segmentation with your scripts. How can the model know what t osegment if we don'T provide any examples of image/segmentation pairs? Do I need...

Hi, What do you mean by "json file that contains spacing information is required for TIFF files. An example for a 3D TIFF stack with units corresponding to 7.6 in...

Could you add a script for inference on any dataset using any pretrained model? I don't understand why we have to export a model as zip and "install" it from...

Is it possible to run prediction on very large images? (With some kind of tiling) If not, do you have a suggestion on how to implement that? Thanks for your...

Hi I a mrunning colab fold but get this message "WARNING: You are welcome to use the default MSA server, however keep in mind that it's a limited shared resource...