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Regression Transformer - facilitate scaffold decoration

Open jannisborn opened this issue 2 years ago • 2 comments

Currently, the RT supports only plain inference with user provided masked inputs like:

<QED>0.123|[C][MASK][C][O]

which is prohibitive, especially since we use SELFIES. Til now, scaffold decoration was impossible with selfies since smiles-selfies conversion mappings could not be retrieveid. This is fixed in SELFIES >=2.1.0, for details see https://github.com/aspuru-guzik-group/selfies/pull/75.

Bumping selfies to >=2.1.0 requires an update of PaccMann models, so this issue is sequential to #38.

jannisborn avatar Feb 21 '22 14:02 jannisborn

This is stalled until selfies 2.1.0 will be officially released.

jannisborn avatar Feb 21 '22 14:02 jannisborn

Removing the stall since Selfies 2.1.0 has been released: https://github.com/aspuru-guzik-group/selfies/releases/tag/v2.1.0

jannisborn avatar May 23 '22 08:05 jannisborn

Solved indirectly via sampling_wrapper feature. See PRs #77, #157, #163

jannisborn avatar Feb 14 '23 12:02 jannisborn