Gene with CDS subfeatures is not rendered

[cmdcolin]

trafficstars

GFF from NCBI for SARS-CoV2 has this format

more support for "bare CDS" type features in general may benefit (e.g. allowing sequence feature panel to work on them, currently it only works on transcript type features)

[cmdcolin]

gff lines look approximately like this

NC_045512.2	RefSeq	gene	266	21555	.	+	.	ID=gene-GU280_gp01;Dbxref=GeneID:43740578;Name=ORF1ab;gbkey=Gene;gene=ORF1ab;gene_biotype=protein_coding;locus_tag=GU280_gp01
NC_045512.2	RefSeq	CDS	266	13468	.	+	0	ID=cds-YP_009724389.1;Parent=gene-GU280_gp01;Dbxref=GenBank:YP_009724389.1,GeneID:43740578;Name=YP_009724389.1;Note=pp1ab%3B translated by -1 ribosomal frameshift;exception=ribosomal slippage;gbkey=CDS;gene=ORF1ab;locus_tag=GU280_gp01;product=ORF1ab polyprotein;protein_id=YP_009724389.1
NC_045512.2	RefSeq	CDS	13468	21555	.	+	0	ID=cds-YP_009724389.1;Parent=gene-GU280_gp01;Dbxref=GenBank:YP_009724389.1,GeneID:43740578;Name=YP_009724389.1;Note=pp1ab%3B translated by -1 ribosomal frameshift;exception=ribosomal slippage;gbkey=CDS;gene=ORF1ab;locus_tag=GU280_gp01;product=ORF1ab polyprotein;protein_id=YP_009724389.1

note that this technically also has ribosomal slippage

[cmdcolin]

gff from "Send to->File->Complete record->GFF3" at https://www.ncbi.nlm.nih.gov/nuccore/NC_045512

[cmdcolin]

motivated by testing msa viewer on non-human examples

[cmdcolin]

worth checking into this some more, ian's students trying to load some viral genomes:)