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Create single cell data demo

Open cmdcolin opened this issue 2 years ago • 1 comments

Examples of this could include making an example of a multibigwig for single cell or something like this

cmdcolin avatar Nov 22 '23 14:11 cmdcolin

Some ideas from Lincoln for compatibility / best usability with single cell data:

  • UMAP plugin that shows clusters or single points of data, whereupon clicking it can show the corresponding wiggle track
  • look at expression levels of a series of isoforms, isoform specific differences between cell types
  • compare two different clusters of single cell data, each cluster becomes a track and the track shows you the known gene isoforms and then the short read sequence or the distribution of short read seq from that cluster
  • integrate SEURAT formatted objects and dump into a UMAP in a relatively portable way

carolinebridge avatar Jan 03 '24 20:01 carolinebridge