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fetchSizeLimit as a track_alignments function argument ?

Open PBMCHUGA opened this issue 1 year ago • 4 comments

Hi, Would it be possible to set up a "fetchSizeLimit": 1000 from R ? I tried to modify get_aligment_adapter function

... stringr::str_glue( '"adapter": {{ ', '"type": "BamAdapter", ', '"bamLocation": {{ ', '"uri": "{track_data}" ', "}}, ", '"index": {{ "location": {{ "uri": "{index}" }} }} ', ', "fetchSizeLimit" : 1000}}')) ...

without success, i might do something wrong...

Thanks a lot for your advice,

PBMCHUGA avatar Jun 20 '23 12:06 PBMCHUGA