allow load of combined GPI / GPAD files into Apollo after a load of GFF3 to merge evidence

[nathandunn]

allow load of GAF / GPAD files into Apollo as GO Annotations

Gene names will automatically associate.

• [x] verify round-trip import GFF3
• [ ] create web-services that takes GPI + GPAD
• [ ] write loader groovy script that takes GPI + GPAD

[obsidian83]

GAF/GPI&GPAD loading for Apollo First use case, curator wants to add a GO term to the functional annotation. To avoid redundancy the GO term needs to be represented in the interface Second use case, curator wants to add a redundant GO term but with a stronger evidence code, Before a gene was IEA for Hexakinase activity, now it has been experimentally validated, the old metadata is defunct and needs to be deleted and a new entry using IDA and associated metadata created. Goterms and evidence need to be represented in the interface.

[nathandunn]

Example GFF3 with GO terms properly represented:

gff3_examples.zip

[nathandunn]

@obsidian83

Just a note, in the Apollo interface we won't allow creation of a GO term without evidence. But I think we can support (or currently support) the rest of those use-cases.

If there is a good reason to add a GO term without anything else, a curator would use the DBxref.