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20 hours ago •
GDKO
GDKO
Question about avp prepare output
Hi @GDKO,
it's me again @bheimbu. I have a question concerning the output of avp prepare…
query name donor ingroup AI HGTindex query hits number AHS outg_pct
229769_8676 Uniref90|UniRef90_A0A4R7CTD7:14:38.4:8.48e-75:250 Uniref90|UniRef90_E7CIQ5:1:45.4:4.62e-100:311 -58.17194306956131 -61.0 500 26007.388157305424 99
229769_3470 :::: Uniref90|UniRef90_A0A834V977:15:42.8:9.47e-248:726 -460.51701859880916 -726.0 500 -41372.008650311625 0
229769_4622 Uniref90|UniRef90_A0A2S9JLU1:1:49.8:1.58e-130:395 Uniref90|UniRef90_E7CIQ5:252:43.2:2.87e-103:321 62.766684693571875 74.0 500 42835.27786623576 99
229769_7930 Uniref90|UniRef90_L8GME8:7:50.8:5.29e-130:387 Uniref90|UniRef90_A0A8J2WLW8:39:37.2:4.09e-64:218 151.7133428617915 169.0 500 2411.325978706731 94
229769_4131 Uniref90|UniRef90_UPI00093AA699:24:63.7:1.35e-210:615 Uniref90|UniRef90_A0AA38IBE4:2:77.3:2.96e-260:730 -1.3500311979441904e-10 -115.0 500 140346.83844536747 94
229769_22899 Uniref90|UniRef90_A0A7C3TB98:3:41.8:1.05e-38:149 Uniref90|UniRef90_A0A9Q0N8B2:240:33.5:5.51e-18:90.5 47.70947631887631 58.5 500 2152.0361571608355 99
Why is 229769_3470 excluded from downstream analyses? It's actually a well-annotated contig including several GH2s etc., see below.
Cheers @bheimbu
ps: This also happens for other species I'm studying.
