g3viz
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G3viz
Lollipop-diagram to interactively visualize genetic mutations
Hi, I was trying to install the package in RStudio and get an error (please see below). I have also attached my sessionInfo(). Is there anything else that I should...
When loading CSV data is it possible to highlight specific mutations as a seperate categories within the lollipop plot. See below for example:  Here I went into the html...
Is there a way to set e.g. truncating variants to be circles (default shape) and missense to be squares, etc? It would be more friendly to color-blind people vs. relying...
I want to present my mutation list with G3viz. The input file is formated like example file "ccle.csv" and can be read by readMAF. The program promotes "Error in hgnc2pfam(hgnc.symbol...
I'm trying to use the guide to generate plots from a tsv file. The first command for reading tsv files read my file as an empty file, i.e.: "". I'm...
In some scenarios, the user may have a MAF already loaded into a data frame. This is the case for our workflows because MAF data is retrieved from a local...
Hi - This is Ino from the cBioPortal team. We are looking to retire cgdsr, but we see g3viz uses it quite a bit. How complex would it be to...
As, writen in the documation, `g3viz::g3Lollipop.options(chart.width= 800)` parameter can contain only numeric values that represent pixels. Would that be possible to add option for `"auto"`, `"full_width"`, `"100%"` or similar to...
Hi, Your "hgnc2pfam.rdb" is completely outdated, and so all lollipops mutations don't match correctly. It would be nice to update it, or in a more reliable and sustainable way, permit...
