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System requirements for larger input

Open washedgram opened this issue 5 years ago • 0 comments

I am running this program on a shared cluster and using data for ~1,000 variant mutations worked within the constraints of system/memory usage for jobs on this cluster; however, trying it with 10,000 did not. Is it possible to estimate the system requirements/usage for both the chromatin.py and predict.py scripts as well as using the closest-features and sort-bed command 'strip'? I have to submit this information to the admin for running more intensive jobs.

washedgram avatar Dec 03 '19 21:12 washedgram