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Errer on running feature.table_pre_process
Hello,
I'm running on the ANCOM-BC tutorial. I got the error "could not find function "feature.table_pre_process". Do I need any more installation of prerequisites?
I attached my code first.
library(ANCOMBC) library(phyloseq) library(testthat) library(tidyverse) library(microbiome) library(rmeta) library(nlme) library(compositions)
Load example data
data(dietswap) pseq = dietswap n_taxa = ntaxa(pseq) n_samp = nsamples(pseq)
Metadata
meta_data = meta(pseq)
Taxonomy table
taxonomy = tax_table(pseq)
Absolute abundances
otu_absolute = abundances(pseq)
Pre-processing
feature.table = otu_absolute; sample.var = "sample"; group.var = "bmi_group"; zero.cut = 0.90; lib.cut = 1000; neg.lb = TRUE pre.process = feature.table_pre_process(feature.table, meta_data, sample.var, group.var, zero.cut, lib.cut, neg.lb)
R version is 4.2.1 patched.
Sincerely,
Hanbeen Kim