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Update Anaconda docs

Open chrisequalsdev opened this issue 10 months ago • 2 comments

URL of existing content (a rendered, sciwiki.fredhutch.org link)

https://sciwiki.fredhutch.org/compdemos/python_virtual_environments/#using-anaconda-to-manage-a-virtual-environment

Specific information requests or concerns, or specific region on page of content to refresh.

Remove references to using Anaconda Remove link to anaconda.com which is blocked now

@ GitHub username of the listed primary reviewer of the page if known

chrisequalsdev avatar Feb 13 '25 19:02 chrisequalsdev

Sorry if this is not the right place to ask, but is there another channel_alias we can use to install packages from? I noticed that pulling from conda-forge via the default https://conda.anaconda.org/ no longer works on the Fred Hutch network.

$ conda create -n tmp -c conda-forge python
…
CondaHTTPError: HTTP 000 CONNECTION FAILED for url <https://conda.anaconda.org/conda-forge/linux-64/repodata.json>

victorlin avatar Feb 14 '25 18:02 victorlin

Sorry if this is not the right place to ask, but is there another channel_alias we can use to install packages from? I noticed that pulling from conda-forge via the default https://conda.anaconda.org/ no longer works on the Fred Hutch network.

$ conda create -n tmp -c conda-forge python … CondaHTTPError: HTTP 000 CONNECTION FAILED for url https://conda.anaconda.org/conda-forge/linux-64/repodata.json

This is a bit of a new issue being worked on. SciComp has some docs here: https://conda-forge.fredhutch.org. You can also email scicomp@ for other questions.

chrisequalsdev avatar Feb 21 '25 20:02 chrisequalsdev

Remove Anaconda content Maybe add mamba/mini-conda content/link Also explain all the parts and how to be successful

sitapriyamoorthi avatar May 16 '25 19:05 sitapriyamoorthi

This also references old conda information

atombaby avatar Jun 02 '25 17:06 atombaby

Hey @atombaby, I just read through _datademos/computational_rank.md and the information there seems current, do you remember what about that content in there you thought was old? It links to an Anaconda page for managing virtual environments, but I believe that documentation is still relevant and the best source of that information, even for Miniforge conda.

seankross avatar Jul 01 '25 15:07 seankross

I think I fixed that page. I don't think there's much more to do to resolve this issue, but I'll have another look.

atombaby avatar Jul 01 '25 16:07 atombaby

I agree after looking into both

  • https://sciwiki.fredhutch.org/compdemos/python_virtual_environments/

and

  • https://sciwiki.fredhutch.org/datademos/computational_rank/

they both look up-to-date to me.

@sitapriyamoorthi do you mind if we close this?

seankross avatar Jul 01 '25 21:07 seankross

If you both think its good to go please go ahead and close

sitapriyamoorthi avatar Jul 01 '25 22:07 sitapriyamoorthi

fyi @atombaby I am closing this

seankross avatar Jul 02 '25 18:07 seankross