Lukas Klein

icon indicating a website link https://lukas-klein.systems/

icon company Hochschule Darmstadt icon location Stuttgart icon location Bachelor of Science in Biotechnology and Bioinformatics, Master of Science in Data Science, Researcher @ Hochschule Darmstadt

Results 5 issues of Lukas Klein

Fix shutdown, when _tokenmanager isn't even set

Hi, I sometimes get this exception during shutdown: ``` WARNING:coap:Aborting connection: Server shutdown ERROR:asyncio:Exception in callback _SelectorSocketTransport._call_connection_lost(None) handle: Traceback (most recent call last): File "/usr/local/lib/python3.8/asyncio/events.py", line 81, in _run self._context.run(self._callback,...

Hitting vCPU limit

4 comment

Hi, While running Tibanna with Snakemake i keep hitting my vCPU limit. While Snakemake supports a job limit for Cluster executions (-j), it doesn't use that for Tibanna. Might this...

.json files aren't JSON

The JSON files in the data directory are JavaScript files. When extracting the `data = [...]`, the Python JSON parser still implodes. This is caused by commas before the `}`s.

Current downloadable reference archive is missing the hmm/rna folder

The archive at: http://ebg.ucalgary.ca/metaerg/db.tar.gz is missing the hmm/rna folder. Older versions used the hmmrna folder from the repo, current version expects the DBDIR/hmm/rna folder, which is also created by the...

Fix BLAST+ and BioPerl installation in Dockerfile

Add correct BLAST+ download link and force XML::DOM::XPath installation to ignore their broken test.