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the error when dedup the sam when use the bismak

Open Jiangjiangzhang6 opened this issue 5 months ago • 1 comments

bismark image the map command : /bismark --genome_folder ../01.hap1 --hisat2 --non_directional -1 ../clean_ZHM1H.R1.fastq.gz -2 ../clean_ZHM1H.R2.fastq.gz -p 5 -L 30 -N 1 -o hap1 #--output_dir ./ --bam hap1_bismark_hisat2_pe.bam

my friends, what's wrong with it, hope your reply

Jiangjiangzhang6 avatar Sep 02 '24 03:09 Jiangjiangzhang6