Bismark
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Add cytosine context methylation totals to docs
We currently don't seem to have a description of the context specific methylation totals in the new (and awesome) docs. More information on the report are here.
Just as a reminder, the report looks at 2 bases downstream, as well as 1 base upstream of the C taking part in the methylation call. This is useful for looking at methylation in specific contexts (e.g. CpA
only), and also when using GpC
methylases that introduce methylation in GpC
context
upstream C-context full context count methylated count unmethylated percent methylation
A CAA ACAA 308398 93360 23.24
C CAA CCAA 329555 75518 18.64
G CAA GCAA 242262 118175 32.79
T CAA TCAA 302209 86219 22.20
A CAC ACAC 266786 91121 25.46
C CAC CCAC 409749 89154 17.87
...