Incompatible with python3

[amoghpj]

There are tons of incompatibilities with python3. I am trying to fix them but without a better understanding of the whole project, a dumb translation might not be ideal. Any plans for python3 support?

[berkyalcinkaya]

Do you have a python3 compatible version of CellStar @amoghpj? I have run in to the same problem.

[amoghpj]

Hi, I do not have a functional version of python3 yet. It looks like the conversion is non-trivial, and needs some in-depth understanding of the code. If the author of the project @Fafa87 thinks this is worthwhile, I would be willing to help with the effort, but in the meantime, I have used it successfully in a python2 virtual environment.

[lnilya]

I managed to get it to run in Python 3.7, with quite a bit of modifications that "seem" not to affect the segmentation. I think partially it is also related to versions of libraries having different behaviour. Check the included libraries.txt for my version. However I found the algorithm oddly overdependent on the type of input images and literally nothing I had produced any usable result. I couldn't find any documentation on the 25 or so parameters present and it makes it difficult.

The CellProfiler plugin doesn't work for me either, but yeah the last proven version I think is cell profiler 2 which doesn't even start.

cellstart_python3.zip

[Fafa87]

Python3 compatibility almost done.