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Published 20 hours ago • verified publisher icon FAIRplus

new recipe request, how to perform ontology annotation using zooma and ols

Open FuqiX opened this issue 3 years ago • 1 comments

This recipe shows how to perform automatized ontology annotation with ZOOMA and OLS. It explains what is ontology annotation, annotation tools available and a zooma annotation demo.

  • [ ] write recipe
  • [ ] assign reviewer
  • [ ] review
  • [ ] convert to markdown
  • [ ] publish

Recipe (WIP) here

FuqiX avatar Jul 23 '20 09:07 FuqiX

To answer this question from EBiSC

Zooma is not used for automatic ontology annotation, we use the web interface of zooma to allow user to select ontology annotation based on a free text entry

  • therefore we have wrong/inconsistent annotations
  • example: for 'fibroblast', we have 4 different ontology entries (BTO, CL, FMA, NCIT)
  • we have a list of prefered ontologies, but all of these ontologies are on list

FuqiX avatar Jul 29 '20 09:07 FuqiX