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Published 20 hours ago • verified publisher icon ExpressionAnalysis
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Using k-mers to call HLA alleles in RNA sequencing data

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"Not enough reads to make call" error.

Issue: Consistently getting a "not enough reads to make call" error. I am using the official released HLAProfiler database (downloaded https://github.com/ExpressionAnalysis/HLAProfiler/releases/tag/v1.0.0-db_only). When I run this predict command: $ perl HLAProfiler.pl...

dottieyu avatar dottieyu

Can´t locate Kraken module

When I ran HLA Profiler for the first time I got this error message: Can't locate /modules/RunKraken.pm in @INC (you may need to install the ::modules::RunKraken module) (@INC contains: /Users/manuel/programs/miniconda3/lib/perl5/site_perl/5.22.0/darwin-thread-multi-2level...

MRamirezGarras avatar MRamirezGarras

Allele Quantification Functionality

It seems a waste of information just to get HLA allele identifications from RNA-seq data but not expression quantification. Could the software also output gene- or allele-level quantification, similar to...

DarioS avatar DarioS

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verified publisher icon ExpressionAnalysis

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Using k-mers to call HLA alleles in RNA sequencing data

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