TypeError: string indices must be integers

[quangnguyenbn99]

Hello, First of all, Thank you for your contribution very much. However, I'm facing the problem of training with pretrained weight of ESM1b. Whenever I try to train the NetSurfP3 with the language model from Facebook. It could not run smoothly as NetsurfP2. The error is as follows:

WARNING:setup:"logging.yml" not found. Using basicConfig. INFO:nsp3.nsp3.main:Building: nsp3.models.ESM1b Traceback (most recent call last): File "/home/quang/.conda/envs/nsp3/bin/nsp3", line 33, in sys.exit(load_entry_point('nsp3', 'console_scripts', 'nsp3')()) File "/home/quang/.conda/envs/nsp3/lib/python3.8/site-packages/click/core.py", line 829, in call return self.main(*args, **kwargs) File "/home/quang/.conda/envs/nsp3/lib/python3.8/site-packages/click/core.py", line 782, in main rv = self.invoke(ctx) File "/home/quang/.conda/envs/nsp3/lib/python3.8/site-packages/click/core.py", line 1259, in invoke return _process_result(sub_ctx.command.invoke(sub_ctx)) File "/home/quang/.conda/envs/nsp3/lib/python3.8/site-packages/click/core.py", line 1066, in invoke return ctx.invoke(self.callback, **ctx.params) File "/home/quang/.conda/envs/nsp3/lib/python3.8/site-packages/click/core.py", line 610, in invoke return callback(*args, **kwargs) File "/ssd1/quang/dti2d/NetSurfP-3.0/nsp3/nsp3/cli.py", line 32, in train main.train(config, resume) File "/ssd1/quang/dti2d/NetSurfP-3.0/nsp3/nsp3/main.py", line 42, in train model = get_instance(module_arch, 'arch', cfg) File "/ssd1/quang/dti2d/NetSurfP-3.0/nsp3/nsp3/main.py", line 285, in get_instance return getattr(module, ctor_name)(*args, **config[name]['args']) File "/ssd1/quang/dti2d/NetSurfP-3.0/nsp3/nsp3/models/ESM1b/model.py", line 23, in init self.embedding = ESM1bEmbedding(language_model, **kwargs) File "/ssd1/quang/dti2d/NetSurfP-3.0/nsp3/nsp3/embeddings/esm1b.py", line 42, in init alphabet = esm.Alphabet.from_architecture(embedding_args['arch']) TypeError: string indices must be integers

looking forward to hearing from you soon!