ErisonChen

Anyone use diamond output xml file for b2gpipe?

13

Hi sir, I'm in a hurry to solve this problem,thanks! Two xml files are got from blast and diamond separated. The b2gpipe code is `java -cp ./b2g4pipe/*:/b2g4pipe/ext/*: es.blast2go.prog.B2GAnnotPipe -in test.xml...

CLUSTALW and MSF format

4

hi @rcedgar with muscle v5. How could i output aligned file with the clustalw or GCG MSC format. Thanks a lot

Summarized results of by_loci/ to summarized.isophase_results.txt. ``` Traceback (most recent call last): File "./software/cDNA_Cupcake-master/phasing/utils/collect_all_vcf.py", line 14, in for r in reader: snps_by_chrom[r.CHROM].append((r.POS, r)) File "./software/anaconda2/lib/python2.7/site-packages/vcf/parser.py", line 586, in next samples...