Taj Azarian

icon indicating a website link https://azarianlab.science/ icon indicating an email [email protected]

icon company University of Central Florida icon location Orlando, Florida icon location Assistant Professor, Genomics and Bioinformatics Cluster, Burnett School of Biomedical Sciences

Results 4 comments of Taj Azarian

Analysis using refseq complete genome sequence

We are having the same issue with v3.13.0. Were you able to find a solution?

Output invariant sites and nucleotide frequencies

From your example in the README: >sample1 AGACACAGTCAC >sample2 AGACAC----AC >sample3 AAACGCATTCAN -s (or stderr) would produce: Input stats: Alignment length: 12 Proportion Ns: 0.03 Proportion Gap sites: 0.11 Nucleotide...

ImportTaxomoy.pl: command not found

Are you using a Conda install or direct from source? If from conda, then it will be "ktImportTaxonomy"

add bootstrap plotting to underlying R code

I second this with a minor addition... provide the option to label branches with an asterisk that are greater than a certain bootstrap value. Often, it is messy to label...