FastMLST

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Error: HTTP Error 429: Too Many Requests

9

Hi, when I try to test your tool I run in the following error: ``` warnings.warn( Downloading Schemes using 40 threads: 0%| | 0/153 [00:00

lfenske-93

``` --- mlst.py 2023-04-06 20:38:09.323863921 +0000 +++ mlst.py 2023-04-06 20:37:46.011441012 +0000 @@ -158,10 +158,10 @@ return None else: dfblast = dfblast.join( - dfblast['sseqid'].str.split('.', 1, expand=True). + dfblast['sseqid'].str.split(pat='.', n=1, expand=True). rename(columns={0:...

marade

Allow user to define pubmlst location

5

Because of permissions, non-admin users can't run some code, e.g. fastmlst --scheme-list results in following error: ``` Traceback (most recent call last): File "/opt/anaconda3/envs/fastmlst/bin/fastmlst", line 122, in pathdb.mkdir(exist_ok=True, parents=True) File...

dgslos

Add other schemes

2

Hi, great tool! It would be really nice if there was an option to add a new scheme locally.

marithetland

Some problems from the results

1

Dear EnzoAndree I run in terminal, and the result gave me this notification below: We instead now recommend building your command line and invoking it directly with the subprocess module....

DrDinhLuong

Dear EnzoAndree I am using comand: --db_path But it didn't working. Can you help me fix this, pls? Thank you so much BW

DrDinhLuong