EnvironmentOntology
closing several old term request issues from Jagadish
- [x] close #1030
- [x] close #1075
- [x] close #1191
- [x] close #1193
- [x] close #1200
- [x] close #1089
- [x] check Combined NMDC ENVO_template_robot_sheet
- [x] check NMDC-01_EnvO_template_robot_sheet
- [ ] check NMDC-03_EnvO_template_robot_sheet
- [x] check NMDC_02_ENVO_template_robot_sheet
Checking against https://github.com/EnvironmentOntology/envo/blob/master/src/envo/envo-edit.owl
I don't see the following from NMDC-03_EnvO_template_robot_sheet
| ontology ID | label |
|---|---|
| ENVO:03600090 | alcohol fermentation pit |
| ENVO:03600091 | clay fermentation pit |
| ENVO:03600092 | artificial pond |
| ENVO:03600093 | artificial satellite |
I do see
- http://purl.obolibrary.org/obo/ENVO_03600039 (fermentation pit), but that doesn't have any subclasses.
- http://purl.obolibrary.org/obo/ENVO_00000377 (artificial lake)
http://purl.obolibrary.org/obo/ENVO_03600039 (fermentation pit) does say
AnnotationAssertion(Annotation(http://www.geneontology.org/formats/oboInOwl#hasDbXref https://en.wikipedia.org/wiki/Baijiu) Annotation(http://www.geneontology.org/formats/oboInOwl#hasDbXref https://www.frontiersin.org/articles/10.3389/fmicb.2020.01223/full) http://purl.obolibrary.org/obo/IAO_0000115 http://purl.obolibrary.org/obo/ENVO_03600039 "A pit which has been constructed for use in fermentation processes that will yield alcoholic spirits."@en)
So maybe we can say that another 'alcohol fermentation pit' term doesn't need to be created, but I would like to add it as a (narrow?) synonym.
| ontology ID | label | parent class | definition | definition cross reference | comment | comment cross reference | editors note | exact synonym | broad synonym | narrow synonym | related synonym | in subset | cross reference | subclass axiom | creation date | created by | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | AL rdfs:label@en | SC % | AL IAO:0000115@en | >AI oboInOwl:hasDbXref SPLIT=| | AL rdfs:comment@en | >AI oboInOwl:hasDbXref SPLIT=| | AL IAO:0000116@en | AL oboInOwl:hasExactSynonym@en SPLIT=| | AL oboInOwl:hasBroadSynonym@en SPLIT=| | AL oboInOwl:hasNarrowSynonym@en SPLIT=| | AL oboInOwl:hasRelatedSynonym@en SPLIT=| | A oboInOwl:inSubset SPLIT=| | AI oboInOwl:hasDbXref SPLIT=| | SC % SPLIT=| | AT oboInOwl:creation_date^^xsd:dateTime | AI oboInOwl:created_by SPLIT=| | |||||||||
| ENVO:03600092 | artificial pond | pond | A pond which has been constructed by humans or their technologies. | Definition from 2021-08-05 call with Buttigieg, Duncan and Miller | add axioms to reason this under human construction | 2021-08-09T15:00:00.000Z | https://orcid.org/0000-0001-9076-6066|https://orcid.org/0000-0002-4366-3088|https://orcid.org/0000-0001-9625-1899 | ||||||||||||||||||
| ENVO:03600093 | artificial satellite | human construction | A human construction that has intentionally been placed into orbit. | https://en.wikipedia.org/wiki/Satellite | Not to be confused with a natural satellite like the earth's moon (https://en.wikipedia.org/wiki/Natural_satellite) | 2021-08-09T15:00:00.000Z | https://orcid.org/0000-0001-9076-6066|https://orcid.org/0000-0002-4366-3088|https://orcid.org/0000-0001-9625-1899 |
Please create a PR with your suggested additions and we'll close these lists. Thanks for detecting the omissions @turbomam
On fermentation pit - I'd generalise that class' definition and add a subclass for alcoholic fermentation pits