envo basic is missing many parents

Open cmungall opened this issue 4 years ago • 3 comments

caused by this:

we should be running reason prior to making basic?

Aug 06 '21 20:08 cmungall

related to #1199

Aug 06 '21 20:08 wdduncan

@cmungall Why would the envo-basic.owl have parents but not the obo or json?

Aug 09 '21 15:08 wdduncan

FYI, here parts from the makefile:

# TODO - fix IRI
subsets/envo-basic.owl: envo-simple.owl
        $(OWLTOOLS) $< imports/ro_import.owl --merge-imports-closure --set-ontology-id $(OBO)/$@ -o [email protected] && mv [email protected] $@

subsets/envo-basic.obo: envo-simple.owl
        $(OWLTOOLS) $< imports/ro_import.owl --merge-imports-closure  --add-obo-shorthand-to-properties --set-ontology-id $(OBO)/$@ -o -f obo --no-check [email protected] && grep -v ^owl-axioms [email protected] > $@

There isn't a envo-basic.json target. So, I'm not sure how that gets produced.

envo-simple.owl does have parent terms.

Aug 09 '21 15:08 wdduncan