Updating Xenium explorer.
Thank you @senbaikang for your multi-GPU solution!
Hi @EliHei2 I realized that the
seg2explorerfunction is kind of out-of-date: https://www.10xgenomics.com/support/software/xenium-onboard-analysis/latest/advanced/xoa-output-zarrThe
cells.zarr.zipfile cannot be visualized with the XOA v3.2 data. My solution is to extract nuclei and cell coordinates as GEOJSON files and useXenium Rangerto import them (https://www.10xgenomics.com/support/software/xenium-ranger/latest/analysis/inputs/segmentation-inputs), but that's pretty time consuming and will take additional ~10 G of hard drive space for each sample. If you can fix this, it would be wonderful!Thank you! Qijie
Originally posted by @MiracleEaTu in #83