Eduardo Eyras

Hi thanks for your email it could be that all these cases have similar PSI values in both conditions and the genes have similar expression, so they are tested within...

Dear Sarah, Did you get an output for some events? It could be possible that this happens only for events that do not have expression for the associated transcripts. You...

Have you checked that there is no difference in the transcript IDs? E.g. hidden characters, additional spaces, etc... or missing headers where needed? Alternatively, it would be the missing values,...

What python version are you using? E. On Mon, 5 Jun 2023 at 19:08, TimvanderWiel1 ***@***.***> wrote: > I have the same issue, i generated a TPM file with FeatureCounts...

Thanks for the message. We're looking into it. E. On Mon, 27 Sept 2021 at 21:56, Eric G. Kariuki ***@***.***> wrote: > I believe I am facing a similar challenge...

Hi Martina, We decided to focus on CpG sites, which are the most common methylation sites in humans, but everything should be applicable to non-CG sites. However, we have not...

Hi, you have -nan 6, but this options reads a proportion between 0 and 1 It might be that the option is not working and you have cases that are...

Hi, Please try something like -nan 0.6 E. On Wed, 10 Jan 2024 at 20:06, liuyh99 ***@***.***> wrote: > Oh! Thank you for pointing out this issue, I changed the...

Thanks for trying that. Another possibility is that the method runs out of events in some range of the expression values. You could consider varying the --area value E. On...

Dear Xi Xu, We have recently handled batch effects using a linear model with co-factors (see https://pubmed.ncbi.nlm.nih.gov/36518527/) In this case, rather than performing a test between conditions, we try to...