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feature location in a join, how to correnctly translate

Open albodrug opened this issue 10 months ago • 3 comments

Hello,

Thanks for the great tool.

I have downloaded a .gb file in a similar way to article_examples/0_download_the_plasmid.py I have a gene with several isoforms and each isoform is summarized in a single CDS feature with a join for positions, like this:

CDS             complement(join(754..944,1514..1784,1858..2045,2923..3103,
                     4147..4728))

When viewing the gene with dna_feature_viewer, it looks like only the first coordinate and the last coordinate are taken into account, making the CDS span from 754 to 4728, when I would like 5 chunks corresponding to the five CDS ranges specified in the join.

Is this possible with DnaFeatureViewer, or should I split these CDS manually?

Here is the picture I obtain: Screenshot from 2024-04-17 15-46-49

Thanks! Alex

albodrug avatar Apr 17 '24 14:04 albodrug