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Published 20 hours ago • verified publisher icon Ecogenomics

Subroutines for classify

Open SilasK opened this issue 3 years ago • 1 comments

I had some bad experiences with gtdb-tk classify which I run on large datasets.

  • For example, It passed all the steps but then failed because the symlinked files already existed.

  • It is relatively difficult to find optimal resources parameter to run the classify step because it involves pplacer + fastANI. Would it be possible to make two sub-routines for this step?

SilasK avatar Nov 08 '21 15:11 SilasK

Hi, Thanks for the feedback We are looking to split the classify step into 2 different steps ( pplacer and ANI ). This should happen in the next release.

Thanks, Pierre

pchaumeil avatar Dec 20 '21 05:12 pchaumeil