Elizabeth Esdaile

Hi Wouter, all it says is "Too few reads detected in out/minimap2/alignment/sample.bam".

Here is the top of the output: chr1 188260577 0 0 chr10 85155674 0 0 chr11 61676917 0 0 chr12 36992759 0 0 chr13 43784481 0 0 chr14 94600235 0...

I know the very basics of snakemake. If you can tell me about what to edit in which file I might be able to sort it out. If it's that...