fix ReFrame issues on NVIDIA Grace

[trz42]

Let's see if ~CI for eessi_container.sh is fixed by installing another package in install_apptainer_ubuntu.sh, and also if~ ReFrame tests succeed.

We should also add some package to be built to test if building still works after running containers with the additional argument --contain.

[eessi-bot[bot]]

Instance eessi-bot-mc-aws is configured to build for:

• architectures: x86_64/generic, x86_64/intel/haswell, x86_64/intel/sapphirerapids, x86_64/intel/skylake_avx512, x86_64/amd/zen2, x86_64/amd/zen3, aarch64/generic, aarch64/neoverse_n1, aarch64/neoverse_v1
• repositories: eessi.io-2023.06-software, eessi.io-2023.06-compat

[eessi-bot[bot]]

Instance eessi-bot-mc-azure is configured to build for:

• architectures: x86_64/amd/zen4
• repositories: eessi.io-2023.06-compat, eessi.io-2023.06-software

[eessi-bot-trz42[bot]]

Instance trz42-GH200-jr is configured to build for:

• architectures: aarch64/nvidia/grace
• repositories: eessi.io-2023.06-software

[eessi-bot-toprichard[bot]]

Instance rt-Grace-jr is configured to build for:

• architectures: aarch64/nvidia/grace
• repositories: eessi.io-2023.06-software

[trz42]

bot: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace

[eessi-bot[bot]]

Updates by the bot instance eessi-bot-mc-aws (click for details)

• received bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace from trz42

  • expanded format: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace

• handling command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace resulted in:

  • no jobs were submitted

[eessi-bot[bot]]

Updates by the bot instance eessi-bot-mc-azure (click for details)

• received bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace from trz42

  • expanded format: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace

• handling command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace resulted in:

  • no jobs were submitted

[eessi-bot-toprichard[bot]]

Updates by the bot instance rt-Grace-jr (click for details)

• account trz42 has NO permission to send commands to the bot

[eessi-bot-trz42[bot]]

Updates by the bot instance trz42-GH200-jr (click for details)

• received bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace from trz42

  • expanded format: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace

• handling command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace resulted in:

  • submitted job 13545111, for details & status see https://github.com/EESSI/software-layer/pull/988#issuecomment-2762692932

[eessi-bot-trz42[bot]]

New job on instance trz42-GH200-jr for CPU micro-architecture aarch64-nvidia-grace for repository eessi.io-2023.06-software in job dir /p/project1/ceasybuilders/bot-trz42/jobs/2025.03/pr_988/13545111

date	job status	comment
Mar 28 22:10:42 UTC 2025	submitted	job id 13545111 awaits release by job manager
Mar 28 22:10:50 UTC 2025	released	job awaits launch by Slurm scheduler
Mar 28 22:11:53 UTC 2025	running	job 13545111 is running
Mar 28 22:42:45 UTC 2025	finished	:cry: FAILURE (click triangle for details) Details :white_check_mark: job output file slurm-13545111.out :x: found message matching FATAL: :white_check_mark: no message matching ERROR: :white_check_mark: no message matching FAILED: :white_check_mark: no message matching required modules missing: :x: no message matching No missing installations :white_check_mark: found message matching .tar.gz created! Artefacts No artefacts were created or found.
Mar 28 22:42:45 UTC 2025	test result	:shrug: UNKNOWN (click triangle for detailed information) Job test file _bot_job13545111.test does not exist in job directory, or parsing it failed.

[trz42]

Rebuild... bot: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace

[eessi-bot[bot]]

Updates by the bot instance eessi-bot-mc-aws (click for details)

• received bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace from trz42

  • expanded format: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace

• handling command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace resulted in:

  • no jobs were submitted

[eessi-bot[bot]]

Updates by the bot instance eessi-bot-mc-azure (click for details)

• received bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace from trz42

  • expanded format: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace

• handling command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace resulted in:

  • no jobs were submitted

[eessi-bot-toprichard[bot]]

Updates by the bot instance rt-Grace-jr (click for details)

• account trz42 has NO permission to send commands to the bot

[eessi-bot-trz42[bot]]

Updates by the bot instance trz42-GH200-jr (click for details)

• received bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace from trz42

  • expanded format: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace

• handling command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace resulted in:

  • submitted job 13545157, for details & status see https://github.com/EESSI/software-layer/pull/988#issuecomment-2762754015

[eessi-bot-trz42[bot]]

New job on instance trz42-GH200-jr for CPU micro-architecture aarch64-nvidia-grace for repository eessi.io-2023.06-software in job dir /p/project1/ceasybuilders/bot-trz42/jobs/2025.03/pr_988/13545157

date	job status	comment
Mar 28 22:42:45 UTC 2025	submitted	job id 13545157 awaits release by job manager
Mar 28 22:43:49 UTC 2025	released	job awaits launch by Slurm scheduler
Mar 28 22:44:52 UTC 2025	running	job 13545157 is running
Mar 28 23:14:38 UTC 2025	finished	:grin: SUCCESS (click triangle for details) Details :white_check_mark: job output file slurm-13545157.out :white_check_mark: no message matching FATAL: :white_check_mark: no message matching ERROR: :white_check_mark: no message matching FAILED: :white_check_mark: no message matching required modules missing: :white_check_mark: found message(s) matching No missing installations :white_check_mark: found message matching .tar.gz created! Artefacts eessi-2023.06-software-linux-aarch64-nvidia-grace-1743202985.tar.gz size: 0 MiB (426755 bytes) entries: 52 modules under 2023.06/software/linux/aarch64/nvidia/grace/modules/all BWA/0.7.18-GCCcore-13.2.0.lua software under 2023.06/software/linux/aarch64/nvidia/grace/software BWA/0.7.18-GCCcore-13.2.0 other under 2023.06/software/linux/aarch64/nvidia/grace no other files in tarball
Mar 28 23:14:38 UTC 2025	test result	:shrug: UNKNOWN (click triangle for detailed information) Job test file _bot_job13545157.test does not exist in job directory, or parsing it failed.

[trz42]

Rebuild after adding /dev to extra bind paths... bot: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace

[eessi-bot[bot]]

Updates by the bot instance eessi-bot-mc-aws (click for details)

• received bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace from trz42

  • expanded format: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace

• handling command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace resulted in:

  • no jobs were submitted

[eessi-bot[bot]]

Updates by the bot instance eessi-bot-mc-azure (click for details)

• received bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace from trz42

  • expanded format: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace

• handling command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace resulted in:

  • no jobs were submitted

[eessi-bot-toprichard[bot]]

Updates by the bot instance rt-Grace-jr (click for details)

• account trz42 has NO permission to send commands to the bot

[eessi-bot-trz42[bot]]

Updates by the bot instance trz42-GH200-jr (click for details)

• received bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace from trz42

  • expanded format: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace

• handling command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace resulted in:

  • submitted job 13545169, for details & status see https://github.com/EESSI/software-layer/pull/988#issuecomment-2762816419

[eessi-bot-trz42[bot]]

New job on instance trz42-GH200-jr for CPU micro-architecture aarch64-nvidia-grace for repository eessi.io-2023.06-software in job dir /p/project1/ceasybuilders/bot-trz42/jobs/2025.03/pr_988/13545169

date	job status	comment
Mar 28 23:16:59 UTC 2025	submitted	job id 13545169 awaits release by job manager
Mar 28 23:17:42 UTC 2025	released	job awaits launch by Slurm scheduler
Mar 28 23:18:46 UTC 2025	running	job 13545169 is running
Mar 28 23:56:45 UTC 2025	finished	:grin: SUCCESS (click triangle for details) Details :white_check_mark: job output file slurm-13545169.out :white_check_mark: no message matching FATAL: :white_check_mark: no message matching ERROR: :white_check_mark: no message matching FAILED: :white_check_mark: no message matching required modules missing: :white_check_mark: found message(s) matching No missing installations :white_check_mark: found message matching .tar.gz created! Artefacts eessi-2023.06-software-linux-aarch64-nvidia-grace-1743204932.tar.gz size: 0 MiB (428313 bytes) entries: 52 modules under 2023.06/software/linux/aarch64/nvidia/grace/modules/all BWA/0.7.18-GCCcore-13.2.0.lua software under 2023.06/software/linux/aarch64/nvidia/grace/software BWA/0.7.18-GCCcore-13.2.0 other under 2023.06/software/linux/aarch64/nvidia/grace no other files in tarball
Mar 28 23:56:45 UTC 2025	test result	:shrug: UNKNOWN (click triangle for detailed information) Job test file _bot_job13545169.test does not exist in job directory, or parsing it failed.

[laraPPr]

@trz42 Can you retarget this pr?

[laraPPr]

@trz42 Can you retarget this pr?