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Published 20 hours ago • verified publisher icon EESSI

{2023.06,a64fx}[foss/2023a] R-bundle-CRAN v2023.12

Open boegel opened this issue 1 year ago • 63 comments

boegel avatar Aug 21 '24 09:08 boegel

Instance boegel-bot-deucalion is configured to build for:

  • architectures: aarch64/a64fx
  • repositories: eessi.io-2023.06-software

eessi-build-deploy-bot-deucalion[bot] avatar Aug 21 '24 09:08 eessi-build-deploy-bot-deucalion[bot]

Instance eessi-bot-mc-aws is configured to build for:

  • architectures: x86_64/generic, x86_64/intel/haswell, x86_64/intel/skylake_avx512, x86_64/amd/zen2, x86_64/amd/zen3, aarch64/generic, aarch64/neoverse_n1, aarch64/neoverse_v1
  • repositories: eessi.io-2023.06-compat, eessi-hpc.org-2023.06-software, eessi-hpc.org-2023.06-compat, eessi.io-2023.06-software

eessi-bot[bot] avatar Aug 21 '24 09:08 eessi-bot[bot]

Instance eessi-bot-mc-azure is configured to build for:

  • architectures: x86_64/amd/zen4
  • repositories: eessi.io-2023.06-compat, eessi-hpc.org-2023.06-compat, eessi-hpc.org-2023.06-software, eessi.io-2023.06-software

eessi-bot[bot] avatar Aug 21 '24 09:08 eessi-bot[bot]

bot: build repo:eessi.io-2023.06-software arch:aarch64/a64fx

boegel avatar Aug 21 '24 09:08 boegel

Updates by the bot instance boegel-bot-deucalion (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • submitted job 72329, for details & status see https://github.com/EESSI/software-layer/pull/680#issuecomment-2301563287

eessi-build-deploy-bot-deucalion[bot] avatar Aug 21 '24 09:08 eessi-build-deploy-bot-deucalion[bot]

Updates by the bot instance eessi-bot-mc-aws (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

eessi-bot[bot] avatar Aug 21 '24 09:08 eessi-bot[bot]

Updates by the bot instance eessi-bot-mc-azure (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

eessi-bot[bot] avatar Aug 21 '24 09:08 eessi-bot[bot]

New job on instance boegel-bot-deucalion for architecture aarch64-a64fx for repository eessi.io-2023.06-software in job dir /home/kehoste/project_dir/bot/jobs/2024.08/pr_680/72329

date job status comment
Aug 21 09:14:31 UTC 2024 submitted job id 72329 awaits release by job manager
Aug 21 09:14:56 UTC 2024 released job awaits launch by Slurm scheduler
Aug 21 09:15:58 UTC 2024 running job 72329 is running
Aug 21 11:52:27 UTC 2024 finished
:cry: FAILURE (click triangle for details)
Details
:white_check_mark: job output file slurm-72329.out
:x: found message matching ERROR:
:x: found message matching FAILED:
:x: found message matching required modules missing:
:x: no message matching No missing installations
:white_check_mark: found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-a64fx-1724240909.tar.gzsize: 317 MiB (332471494 bytes)
entries: 15129
modules under 2023.06/software/linux/aarch64/a64fx/modules/all
ATK/2.38.0-GCCcore-12.3.0.lua
FLAC/1.4.2-GCCcore-12.3.0.lua
Gdk-Pixbuf/2.42.10-GCCcore-12.3.0.lua
GEOS/3.12.0-GCC-12.3.0.lua
GLPK/5.0-GCCcore-12.3.0.lua
googletest/1.13.0-GCCcore-12.3.0.lua
Java/11.0.20.lua
Java/.modulerc.lua
jbigkit/2.1-GCCcore-12.3.0.lua
libdeflate/1.18-GCCcore-12.3.0.lua
libgit2/1.7.1-GCCcore-12.3.0.lua
libogg/1.3.5-GCCcore-12.3.0.lua
libopus/1.4-GCCcore-12.3.0.lua
libsndfile/1.2.2-GCCcore-12.3.0.lua
LibTIFF/4.5.0-GCCcore-12.3.0.lua
libvorbis/1.3.7-GCCcore-12.3.0.lua
LittleCMS/2.15-GCCcore-12.3.0.lua
nettle/3.9.1-GCCcore-12.3.0.lua
NLopt/2.7.1-GCCcore-12.3.0.lua
PCRE/8.45-GCCcore-12.3.0.lua
PostgreSQL/16.1-GCCcore-12.3.0.lua
R/4.3.2-gfbf-2023a.lua
Tk/8.6.13-GCCcore-12.3.0.lua
UDUNITS/2.2.28-GCCcore-12.3.0.lua
Xvfb/21.1.8-GCCcore-12.3.0.lua
software under 2023.06/software/linux/aarch64/a64fx/software
ATK/2.38.0-GCCcore-12.3.0
FLAC/1.4.2-GCCcore-12.3.0
Gdk-Pixbuf/2.42.10-GCCcore-12.3.0
GEOS/3.12.0-GCC-12.3.0
GLPK/5.0-GCCcore-12.3.0
googletest/1.13.0-GCCcore-12.3.0
Java/11.0.20
jbigkit/2.1-GCCcore-12.3.0
libdeflate/1.18-GCCcore-12.3.0
libgit2/1.7.1-GCCcore-12.3.0
libogg/1.3.5-GCCcore-12.3.0
libopus/1.4-GCCcore-12.3.0
libsndfile/1.2.2-GCCcore-12.3.0
LibTIFF/4.5.0-GCCcore-12.3.0
libvorbis/1.3.7-GCCcore-12.3.0
LittleCMS/2.15-GCCcore-12.3.0
nettle/3.9.1-GCCcore-12.3.0
NLopt/2.7.1-GCCcore-12.3.0
PCRE/8.45-GCCcore-12.3.0
PostgreSQL/16.1-GCCcore-12.3.0
R/4.3.2-gfbf-2023a
Tk/8.6.13-GCCcore-12.3.0
UDUNITS/2.2.28-GCCcore-12.3.0
Xvfb/21.1.8-GCCcore-12.3.0
other under 2023.06/software/linux/aarch64/a64fx
no other files in tarball
Aug 21 11:52:27 UTC 2024 test result
:cry: FAILURE (click triangle for details)
Reason
EESSI test suite was not run, test step itself failed to execute.
Details
:white_check_mark: job output file slurm-72329.out
:x: found message matching ERROR:
:white_check_mark: no message matching [\s*FAILED\s*].*Ran .* test case

eessi-build-deploy-bot-deucalion[bot] avatar Aug 21 '24 09:08 eessi-build-deploy-bot-deucalion[bot]

Build of at-spi2-core-2.49.91-GCCcore-12.3.0.eb failed with:

[288/291] Generating atspi/Atspi-2.0.gir with a custom command (wrapped by meson to set env)
FAILED: atspi/Atspi-2.0.gir
...
/bin/bash: /cvmfs/software.eessi.io/versions/2023.06/compat/linux/aarch64/usr/lib64/libtinfo.so.6: no version information available (required by /bin/bash)
/bin/bash: /lib/aarch64-linux-gnu/libc.so.6: version `GLIBC_2.33' not found (required by /cvmfs/software.eessi.io/versions/2023.06/compat/linux/aarch64/usr/lib64/libtinfo.so.6)
...
ninja: build stopped: subcommand failed.

This looks familiar...

boegel avatar Aug 21 '24 16:08 boegel

Seems like a64fx does not have the rebuild of gobject-introspection, see https://github.com/EESSI/software-layer/pull/646

ocaisa avatar Aug 21 '24 17:08 ocaisa

bot: build repo:eessi.io-2023.06-software arch:aarch64/a64fx

boegel avatar Aug 27 '24 07:08 boegel

Updates by the bot instance boegel-bot-deucalion (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • submitted job 87993, for details & status see https://github.com/EESSI/software-layer/pull/680#issuecomment-2311780047

eessi-build-deploy-bot-deucalion[bot] avatar Aug 27 '24 07:08 eessi-build-deploy-bot-deucalion[bot]

Updates by the bot instance eessi-bot-mc-aws (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

eessi-bot[bot] avatar Aug 27 '24 07:08 eessi-bot[bot]

Updates by the bot instance eessi-bot-mc-azure (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

eessi-bot[bot] avatar Aug 27 '24 07:08 eessi-bot[bot]

New job on instance boegel-bot-deucalion for architecture aarch64-a64fx for repository eessi.io-2023.06-software in job dir /home/kehoste/project_dir/bot/jobs/2024.08/pr_680/87993

date job status comment
Aug 27 07:35:10 UTC 2024 submitted job id 87993 awaits release by job manager
Aug 27 07:35:53 UTC 2024 released job awaits launch by Slurm scheduler
Aug 27 07:36:55 UTC 2024 running job 87993 is running
Aug 27 09:11:03 UTC 2024 finished
:cry: FAILURE (click triangle for details)
Details
:white_check_mark: job output file slurm-87993.out
:x: found message matching ERROR:
:x: found message matching FAILED:
:x: found message matching required modules missing:
:x: no message matching No missing installations
:white_check_mark: found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-a64fx-1724749710.tar.gzsize: 97 MiB (102238640 bytes)
entries: 8766
modules under 2023.06/software/linux/aarch64/a64fx/modules/all
ATK/2.38.0-GCCcore-12.3.0.lua
at-spi2-atk/2.38.0-GCCcore-12.3.0.lua
at-spi2-core/2.49.91-GCCcore-12.3.0.lua
FLAC/1.4.2-GCCcore-12.3.0.lua
Gdk-Pixbuf/2.42.10-GCCcore-12.3.0.lua
GEOS/3.12.0-GCC-12.3.0.lua
GLPK/5.0-GCCcore-12.3.0.lua
googletest/1.13.0-GCCcore-12.3.0.lua
GTK3/3.24.37-GCCcore-12.3.0.lua
libepoxy/1.5.10-GCCcore-12.3.0.lua
libgeotiff/1.7.1-GCCcore-12.3.0.lua
libogg/1.3.5-GCCcore-12.3.0.lua
libopus/1.4-GCCcore-12.3.0.lua
libsndfile/1.2.2-GCCcore-12.3.0.lua
libtirpc/1.3.3-GCCcore-12.3.0.lua
libvorbis/1.3.7-GCCcore-12.3.0.lua
LittleCMS/2.15-GCCcore-12.3.0.lua
nettle/3.9.1-GCCcore-12.3.0.lua
nlohmann_json/3.11.2-GCCcore-12.3.0.lua
NLopt/2.7.1-GCCcore-12.3.0.lua
PostgreSQL/16.1-GCCcore-12.3.0.lua
PROJ/9.2.0-GCCcore-12.3.0.lua
UDUNITS/2.2.28-GCCcore-12.3.0.lua
Wayland/1.22.0-GCCcore-12.3.0.lua
Xvfb/21.1.8-GCCcore-12.3.0.lua
software under 2023.06/software/linux/aarch64/a64fx/software
ATK/2.38.0-GCCcore-12.3.0
at-spi2-atk/2.38.0-GCCcore-12.3.0
at-spi2-core/2.49.91-GCCcore-12.3.0
FLAC/1.4.2-GCCcore-12.3.0
Gdk-Pixbuf/2.42.10-GCCcore-12.3.0
GEOS/3.12.0-GCC-12.3.0
GLPK/5.0-GCCcore-12.3.0
googletest/1.13.0-GCCcore-12.3.0
GTK3/3.24.37-GCCcore-12.3.0
libepoxy/1.5.10-GCCcore-12.3.0
libgeotiff/1.7.1-GCCcore-12.3.0
libogg/1.3.5-GCCcore-12.3.0
libopus/1.4-GCCcore-12.3.0
libsndfile/1.2.2-GCCcore-12.3.0
libtirpc/1.3.3-GCCcore-12.3.0
libvorbis/1.3.7-GCCcore-12.3.0
LittleCMS/2.15-GCCcore-12.3.0
nettle/3.9.1-GCCcore-12.3.0
nlohmann_json/3.11.2-GCCcore-12.3.0
NLopt/2.7.1-GCCcore-12.3.0
PostgreSQL/16.1-GCCcore-12.3.0
PROJ/9.2.0-GCCcore-12.3.0
UDUNITS/2.2.28-GCCcore-12.3.0
Wayland/1.22.0-GCCcore-12.3.0
Xvfb/21.1.8-GCCcore-12.3.0
other under 2023.06/software/linux/aarch64/a64fx
no other files in tarball
Aug 27 09:11:03 UTC 2024 test result
:cry: FAILURE (click triangle for details)
Reason
EESSI test suite was not run, test step itself failed to execute.
Details
:white_check_mark: job output file slurm-87993.out
:x: found message matching ERROR:
:white_check_mark: no message matching [\s*FAILED\s*].*Ran .* test case

eessi-build-deploy-bot-deucalion[bot] avatar Aug 27 '24 07:08 eessi-build-deploy-bot-deucalion[bot]

Failure was with HDF-4.2.16-2-GCCcore-12.3.0.eb, failing to download hdf-4.2.16-2.tar.gz, see also https://github.com/easybuilders/easybuild-easyconfigs/issues/21105 + https://github.com/easybuilders/easybuild-easyconfigs/pull/21130

Worked around with a well-aimed eb --from-pr 21130 --fetch in my account on Deucalion.

boegel avatar Sep 07 '24 12:09 boegel

bot: build repo:eessi.io-2023.06-software arch:aarch64/a64fx

boegel avatar Sep 07 '24 12:09 boegel

Updates by the bot instance eessi-bot-mc-aws (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

eessi-bot[bot] avatar Sep 07 '24 12:09 eessi-bot[bot]

Updates by the bot instance eessi-bot-mc-azure (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

eessi-bot[bot] avatar Sep 07 '24 12:09 eessi-bot[bot]

Updates by the bot instance boegel-bot-deucalion (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • submitted job 99554, for details & status see https://github.com/EESSI/software-layer/pull/680#issuecomment-2335173663

eessi-build-deploy-bot-deucalion[bot] avatar Sep 07 '24 12:09 eessi-build-deploy-bot-deucalion[bot]

New job on instance boegel-bot-deucalion for architecture aarch64-a64fx for repository eessi.io-2023.06-software in job dir /home/kehoste/project_dir/bot/jobs/2024.09/pr_680/99554

date job status comment
Sep 07 12:33:40 UTC 2024 submitted job id 99554 awaits release by job manager
Sep 07 12:34:22 UTC 2024 released job awaits launch by Slurm scheduler
Sep 07 12:35:24 UTC 2024 running job 99554 is running
Sep 07 14:49:28 UTC 2024 finished
:cry: FAILURE (click triangle for details)
Details
:white_check_mark: job output file slurm-99554.out
:x: found message matching ERROR:
:x: found message matching FAILED:
:x: found message matching required modules missing:
:x: no message matching No missing installations
:white_check_mark: found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-a64fx-1725720340.tar.gzsize: 164 MiB (172721424 bytes)
entries: 13241
modules under 2023.06/software/linux/aarch64/a64fx/modules/all
Armadillo/12.6.2-foss-2023a.lua
arpack-ng/3.9.0-foss-2023a.lua
ATK/2.38.0-GCCcore-12.3.0.lua
at-spi2-atk/2.38.0-GCCcore-12.3.0.lua
at-spi2-core/2.49.91-GCCcore-12.3.0.lua
CFITSIO/4.3.0-GCCcore-12.3.0.lua
FLAC/1.4.2-GCCcore-12.3.0.lua
Gdk-Pixbuf/2.42.10-GCCcore-12.3.0.lua
GEOS/3.12.0-GCC-12.3.0.lua
Ghostscript/10.01.2-GCCcore-12.3.0.lua
giflib/5.2.1-GCCcore-12.3.0.lua
GLPK/5.0-GCCcore-12.3.0.lua
googletest/1.13.0-GCCcore-12.3.0.lua
GTK3/3.24.37-GCCcore-12.3.0.lua
HDF/4.2.16-2-GCCcore-12.3.0.lua
ImageMagick/7.1.1-15-GCCcore-12.3.0.lua
Imath/3.1.7-GCCcore-12.3.0.lua
json-c/0.16-GCCcore-12.3.0.lua
libepoxy/1.5.10-GCCcore-12.3.0.lua
libgeotiff/1.7.1-GCCcore-12.3.0.lua
libogg/1.3.5-GCCcore-12.3.0.lua
libopus/1.4-GCCcore-12.3.0.lua
libsndfile/1.2.2-GCCcore-12.3.0.lua
libtirpc/1.3.3-GCCcore-12.3.0.lua
libvorbis/1.3.7-GCCcore-12.3.0.lua
LittleCMS/2.15-GCCcore-12.3.0.lua
nettle/3.9.1-GCCcore-12.3.0.lua
nlohmann_json/3.11.2-GCCcore-12.3.0.lua
NLopt/2.7.1-GCCcore-12.3.0.lua
OpenEXR/3.1.7-GCCcore-12.3.0.lua
PostgreSQL/16.1-GCCcore-12.3.0.lua
PROJ/9.2.0-GCCcore-12.3.0.lua
Qhull/2020.2-GCCcore-12.3.0.lua
UDUNITS/2.2.28-GCCcore-12.3.0.lua
Wayland/1.22.0-GCCcore-12.3.0.lua
Xerces-C++/3.2.4-GCCcore-12.3.0.lua
Xvfb/21.1.8-GCCcore-12.3.0.lua
software under 2023.06/software/linux/aarch64/a64fx/software
Armadillo/12.6.2-foss-2023a
arpack-ng/3.9.0-foss-2023a
ATK/2.38.0-GCCcore-12.3.0
at-spi2-atk/2.38.0-GCCcore-12.3.0
at-spi2-core/2.49.91-GCCcore-12.3.0
CFITSIO/4.3.0-GCCcore-12.3.0
FLAC/1.4.2-GCCcore-12.3.0
Gdk-Pixbuf/2.42.10-GCCcore-12.3.0
GEOS/3.12.0-GCC-12.3.0
Ghostscript/10.01.2-GCCcore-12.3.0
giflib/5.2.1-GCCcore-12.3.0
GLPK/5.0-GCCcore-12.3.0
googletest/1.13.0-GCCcore-12.3.0
GTK3/3.24.37-GCCcore-12.3.0
HDF/4.2.16-2-GCCcore-12.3.0
ImageMagick/7.1.1-15-GCCcore-12.3.0
Imath/3.1.7-GCCcore-12.3.0
json-c/0.16-GCCcore-12.3.0
libepoxy/1.5.10-GCCcore-12.3.0
libgeotiff/1.7.1-GCCcore-12.3.0
libogg/1.3.5-GCCcore-12.3.0
libopus/1.4-GCCcore-12.3.0
libsndfile/1.2.2-GCCcore-12.3.0
libtirpc/1.3.3-GCCcore-12.3.0
libvorbis/1.3.7-GCCcore-12.3.0
LittleCMS/2.15-GCCcore-12.3.0
nettle/3.9.1-GCCcore-12.3.0
nlohmann_json/3.11.2-GCCcore-12.3.0
NLopt/2.7.1-GCCcore-12.3.0
OpenEXR/3.1.7-GCCcore-12.3.0
PostgreSQL/16.1-GCCcore-12.3.0
PROJ/9.2.0-GCCcore-12.3.0
Qhull/2020.2-GCCcore-12.3.0
UDUNITS/2.2.28-GCCcore-12.3.0
Wayland/1.22.0-GCCcore-12.3.0
Xerces-C++/3.2.4-GCCcore-12.3.0
Xvfb/21.1.8-GCCcore-12.3.0
other under 2023.06/software/linux/aarch64/a64fx
no other files in tarball
Sep 07 14:49:28 UTC 2024 test result
:cry: FAILURE (click triangle for details)
Reason
EESSI test suite was not run, test step itself failed to execute.
Details
:white_check_mark: job output file slurm-99554.out
:x: found message matching ERROR:
:white_check_mark: no message matching [\s*FAILED\s*].*Ran .* test case

eessi-build-deploy-bot-deucalion[bot] avatar Sep 07 '24 12:09 eessi-build-deploy-bot-deucalion[bot]

There's a lot being successfully built here before we get a failure, maybe we can break this in two?

ocaisa avatar Sep 07 '24 16:09 ocaisa

Last attempt failed on 🥁 Highway:

/tmp/kehoste/easybuild/build/Highway/1.0.4/GCCcore-12.3.0/highway-1.0.4/hwy/base.h: In function hwy::N_NEON::VFromD<D> hwy::N_NEON::LoadU(D, TFromD<D>*) [with D = Simd<signed char, 4, 0>; hwy::EnableIf<((D::kPrivateLanes * sizeof (typename D::T)) == 4)>* <anonymous> = 0; hwy::EnableIf<(! IsSpecialFloat<typename D::T>())>* <anonymous> = 0; hwy::EnableIf<(((long unsigned int{1} << sizeof (typename D::T)) & ((1 << 1) | (1 << 2))) != 0)>* <anonymous> = 0]:
/tmp/kehoste/easybuild/build/Highway/1.0.4/GCCcore-12.3.0/highway-1.0.4/hwy/base.h:983:14: error: inlining failed in call to always_inline void hwy::CopyBytes(const From*, To*) [with long unsigned int kBytes = 4; From = signed char; To = unsigned int]: target specific option mismatch
  983 | HWY_API void CopyBytes(const From* from, To* to) {
      |              ^~~~~~~~~
In file included from /tmp/kehoste/easybuild/build/Highway/1.0.4/GCCcore-12.3.0/highway-1.0.4/hwy/highway.h:401,
                 from /tmp/kehoste/easybuild/build/Highway/1.0.4/GCCcore-12.3.0/highway-1.0.4/hwy/tests/mask_test.cc:25,
                 from /tmp/kehoste/easybuild/build/Highway/1.0.4/GCCcore-12.3.0/highway-1.0.4/hwy/foreach_target.h:152:
/tmp/kehoste/easybuild/build/Highway/1.0.4/GCCcore-12.3.0/highway-1.0.4/hwy/ops/arm_neon-inl.h:2802:15: note: called from here
 2802 |   CopyBytes<4>(p, &buf);
      |   ~~~~~~~~~~~~^~~~~~~~~
In file included from /tmp/kehoste/easybuild/build/Highway/1.0.4/GCCcore-12.3.0/highway-1.0.4/hwy/tests/convert_test.cc:22:
/tmp/kehoste/easybuild/build/Highway/1.0.4/GCCcore-12.3.0/highway-1.0.4/hwy/base.h: In function hwy::N_NEON::VFromD<D> hwy::N_NEON::LoadU(D, TFromD<D>*) [with D = Simd<signed char, 4, 0>; hwy::EnableIf<((D::kPrivateLanes * sizeof (typename D::T)) == 4)>* <anonymous> = 0; hwy::EnableIf<(! IsSpecialFloat<typename D::T>())>* <anonymous> = 0; hwy::EnableIf<(((long unsigned int{1} << sizeof (typename D::T)) & ((1 << 1) | (1 << 2))) != 0)>* <anonymous> = 0]:
/tmp/kehoste/easybuild/build/Highway/1.0.4/GCCcore-12.3.0/highway-1.0.4/hwy/base.h:983:14: error: inlining failed in call to always_inline void hwy::CopyBytes(const From*, To*) [with long unsigned int kBytes = 4; From = signed char; To = unsigned int]: target specific option mismatch
  983 | HWY_API void CopyBytes(const From* from, To* to) {
      |              ^~~~~~~~~
In file included from /tmp/kehoste/easybuild/build/Highway/1.0.4/GCCcore-12.3.0/highway-1.0.4/hwy/highway.h:401,
                 from /tmp/kehoste/easybuild/build/Highway/1.0.4/GCCcore-12.3.0/highway-1.0.4/hwy/tests/convert_test.cc:27,
                 from /tmp/kehoste/easybuild/build/Highway/1.0.4/GCCcore-12.3.0/highway-1.0.4/hwy/foreach_target.h:152,
                 from /tmp/kehoste/easybuild/build/Highway/1.0.4/GCCcore-12.3.0/highway-1.0.4/hwy/tests/convert_test.cc:26:
/tmp/kehoste/easybuild/build/Highway/1.0.4/GCCcore-12.3.0/highway-1.0.4/hwy/ops/arm_neon-inl.h:2802:15: note: called from here
 2802 |   CopyBytes<4>(p, &buf);
      |   ~~~~~~~~~~~~^~~~~~~~~

fixing this is worth doing in a separate PR, I'll keep this one open for now as a target...

boegel avatar Sep 10 '24 13:09 boegel

Separate PR for Highway for A64FX: https://github.com/EESSI/software-layer/pull/697

The interesting part here is that, as @bedroge noticed, Highway is being pulled in as build dependency for Brunsli, but it's not actually required by it at all, see https://github.com/easybuilders/easybuild-easyconfigs/pull/21366

boegel avatar Sep 10 '24 18:09 boegel

bot: build repo:eessi.io-2023.06-software arch:aarch64/a64fx

boegel avatar Sep 10 '24 20:09 boegel

Updates by the bot instance eessi-bot-mc-aws (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

eessi-bot[bot] avatar Sep 10 '24 20:09 eessi-bot[bot]

Updates by the bot instance boegel-bot-deucalion (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • submitted job 102486, for details & status see https://github.com/EESSI/software-layer/pull/680#issuecomment-2341968881

eessi-build-deploy-bot-deucalion[bot] avatar Sep 10 '24 20:09 eessi-build-deploy-bot-deucalion[bot]

Updates by the bot instance eessi-bot-mc-azure (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

eessi-bot[bot] avatar Sep 10 '24 20:09 eessi-bot[bot]

New job on instance boegel-bot-deucalion for architecture aarch64-a64fx for repository eessi.io-2023.06-software in job dir /home/kehoste/project_dir/bot/jobs/2024.09/pr_680/102486

date job status comment
Sep 10 20:38:51 UTC 2024 submitted job id 102486 awaits release by job manager
Sep 10 20:39:09 UTC 2024 released job awaits launch by Slurm scheduler
Sep 10 20:40:12 UTC 2024 running job 102486 is running
Sep 10 23:38:16 UTC 2024 finished
:cry: FAILURE (click triangle for details)
Details
:white_check_mark: job output file slurm-102486.out
:x: found message matching ERROR:
:x: found message matching FAILED:
:x: found message matching required modules missing:
:x: no message matching No missing installations
:white_check_mark: found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-a64fx-1726011189.tar.gzsize: 198 MiB (208057675 bytes)
entries: 14721
modules under 2023.06/software/linux/aarch64/a64fx/modules/all
Armadillo/12.6.2-foss-2023a.lua
arpack-ng/3.9.0-foss-2023a.lua
ATK/2.38.0-GCCcore-12.3.0.lua
at-spi2-atk/2.38.0-GCCcore-12.3.0.lua
at-spi2-core/2.49.91-GCCcore-12.3.0.lua
CFITSIO/4.3.0-GCCcore-12.3.0.lua
FLAC/1.4.2-GCCcore-12.3.0.lua
GDAL/3.7.1-foss-2023a.lua
Gdk-Pixbuf/2.42.10-GCCcore-12.3.0.lua
GEOS/3.12.0-GCC-12.3.0.lua
Ghostscript/10.01.2-GCCcore-12.3.0.lua
giflib/5.2.1-GCCcore-12.3.0.lua
GLPK/5.0-GCCcore-12.3.0.lua
GTK3/3.24.37-GCCcore-12.3.0.lua
HDF/4.2.16-2-GCCcore-12.3.0.lua
ImageMagick/7.1.1-15-GCCcore-12.3.0.lua
Imath/3.1.7-GCCcore-12.3.0.lua
json-c/0.16-GCCcore-12.3.0.lua
LERC/4.0.0-GCCcore-12.3.0.lua
libepoxy/1.5.10-GCCcore-12.3.0.lua
libgeotiff/1.7.1-GCCcore-12.3.0.lua
libogg/1.3.5-GCCcore-12.3.0.lua
libopus/1.4-GCCcore-12.3.0.lua
libsndfile/1.2.2-GCCcore-12.3.0.lua
libtirpc/1.3.3-GCCcore-12.3.0.lua
libvorbis/1.3.7-GCCcore-12.3.0.lua
LittleCMS/2.15-GCCcore-12.3.0.lua
nettle/3.9.1-GCCcore-12.3.0.lua
nlohmann_json/3.11.2-GCCcore-12.3.0.lua
NLopt/2.7.1-GCCcore-12.3.0.lua
OpenEXR/3.1.7-GCCcore-12.3.0.lua
OpenJPEG/2.5.0-GCCcore-12.3.0.lua
PostgreSQL/16.1-GCCcore-12.3.0.lua
PROJ/9.2.0-GCCcore-12.3.0.lua
Qhull/2020.2-GCCcore-12.3.0.lua
SWIG/4.1.1-GCCcore-12.3.0.lua
UDUNITS/2.2.28-GCCcore-12.3.0.lua
Wayland/1.22.0-GCCcore-12.3.0.lua
Xerces-C++/3.2.4-GCCcore-12.3.0.lua
Xvfb/21.1.8-GCCcore-12.3.0.lua
software under 2023.06/software/linux/aarch64/a64fx/software
Armadillo/12.6.2-foss-2023a
arpack-ng/3.9.0-foss-2023a
ATK/2.38.0-GCCcore-12.3.0
at-spi2-atk/2.38.0-GCCcore-12.3.0
at-spi2-core/2.49.91-GCCcore-12.3.0
CFITSIO/4.3.0-GCCcore-12.3.0
FLAC/1.4.2-GCCcore-12.3.0
GDAL/3.7.1-foss-2023a
Gdk-Pixbuf/2.42.10-GCCcore-12.3.0
GEOS/3.12.0-GCC-12.3.0
Ghostscript/10.01.2-GCCcore-12.3.0
giflib/5.2.1-GCCcore-12.3.0
GLPK/5.0-GCCcore-12.3.0
GTK3/3.24.37-GCCcore-12.3.0
HDF/4.2.16-2-GCCcore-12.3.0
ImageMagick/7.1.1-15-GCCcore-12.3.0
Imath/3.1.7-GCCcore-12.3.0
json-c/0.16-GCCcore-12.3.0
LERC/4.0.0-GCCcore-12.3.0
libepoxy/1.5.10-GCCcore-12.3.0
libgeotiff/1.7.1-GCCcore-12.3.0
libogg/1.3.5-GCCcore-12.3.0
libopus/1.4-GCCcore-12.3.0
libsndfile/1.2.2-GCCcore-12.3.0
libtirpc/1.3.3-GCCcore-12.3.0
libvorbis/1.3.7-GCCcore-12.3.0
LittleCMS/2.15-GCCcore-12.3.0
nettle/3.9.1-GCCcore-12.3.0
nlohmann_json/3.11.2-GCCcore-12.3.0
NLopt/2.7.1-GCCcore-12.3.0
OpenEXR/3.1.7-GCCcore-12.3.0
OpenJPEG/2.5.0-GCCcore-12.3.0
PostgreSQL/16.1-GCCcore-12.3.0
PROJ/9.2.0-GCCcore-12.3.0
Qhull/2020.2-GCCcore-12.3.0
SWIG/4.1.1-GCCcore-12.3.0
UDUNITS/2.2.28-GCCcore-12.3.0
Wayland/1.22.0-GCCcore-12.3.0
Xerces-C++/3.2.4-GCCcore-12.3.0
Xvfb/21.1.8-GCCcore-12.3.0
other under 2023.06/software/linux/aarch64/a64fx
no other files in tarball
Sep 10 23:38:16 UTC 2024 test result
:cry: FAILURE (click triangle for details)
Reason
EESSI test suite was not run, test step itself failed to execute.
Details
:white_check_mark: job output file slurm-102486.out
:x: found message matching ERROR:
:white_check_mark: no message matching [\s*FAILED\s*].*Ran .* test case

eessi-build-deploy-bot-deucalion[bot] avatar Sep 10 '24 20:09 eessi-build-deploy-bot-deucalion[bot]

Failure due to checksum error for bold_1.3.0.tar.gz (extension of R-bundle-CRAN-2023.12-foss-2023a.eb)...

== 2024-09-11 00:28:18,724 filetools.py:1307 DEBUG Computed sha256 checksum for /home/kehoste/project_dir/bot/shared/easybuild/sources/r/R-bundle-CRAN/extensions/bold_1.3.0.tar.gz: 4920fbebd22fb1d0f1a31ccc09c98aec446bb6cb5f65a2610437e405c0512c68 (correct checksum: 0ead11d4386c4c0cd578d3a956f809db2001e387e449a431b4ad503f3da38f5f)
== 2024-09-11 00:28:19,086 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/tools/build_log.py:111 in caller_info): Checksum verification for extension source bold_1.3.0.tar.gz failed (at easybuild/framework/easyblock.py:689 in collect_exts_file_info)

fixed in https://github.com/easybuilders/easybuild-easyconfigs/pull/21370

boegel avatar Sep 11 '24 05:09 boegel