Test 550 with GROMACS rebuild in #576

[trz42]

We are interested in verifying if the ReFrame tests run are using the updated GROMACS build. We probably have to inspect the log files on the build cluster for this.

[eessi-bot[bot]]

Instance eessi-bot-mc-aws is configured to build:

• arch x86_64/generic for repo eessi-hpc.org-2023.06-compat
• arch x86_64/generic for repo eessi-hpc.org-2023.06-software
• arch x86_64/generic for repo eessi.io-2023.06-compat
• arch x86_64/generic for repo eessi.io-2023.06-software
• arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-compat
• arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-software
• arch x86_64/intel/haswell for repo eessi.io-2023.06-compat
• arch x86_64/intel/haswell for repo eessi.io-2023.06-software
• arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-compat
• arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-software
• arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-compat
• arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-software
• arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-compat
• arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-software
• arch x86_64/amd/zen2 for repo eessi.io-2023.06-compat
• arch x86_64/amd/zen2 for repo eessi.io-2023.06-software
• arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-compat
• arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-software
• arch x86_64/amd/zen3 for repo eessi.io-2023.06-compat
• arch x86_64/amd/zen3 for repo eessi.io-2023.06-software
• arch aarch64/generic for repo eessi-hpc.org-2023.06-compat
• arch aarch64/generic for repo eessi-hpc.org-2023.06-software
• arch aarch64/generic for repo eessi.io-2023.06-compat
• arch aarch64/generic for repo eessi.io-2023.06-software
• arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-compat
• arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-software
• arch aarch64/neoverse_n1 for repo eessi.io-2023.06-compat
• arch aarch64/neoverse_n1 for repo eessi.io-2023.06-software
• arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-compat
• arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-software
• arch aarch64/neoverse_v1 for repo eessi.io-2023.06-compat
• arch aarch64/neoverse_v1 for repo eessi.io-2023.06-software

[eessi-bot[bot]]

Instance eessi-bot-mc-azure is configured to build:

• arch x86_64/amd/zen4 for repo eessi-hpc.org-2023.06-compat
• arch x86_64/amd/zen4 for repo eessi-hpc.org-2023.06-software
• arch x86_64/amd/zen4 for repo eessi.io-2023.06-compat
• arch x86_64/amd/zen4 for repo eessi.io-2023.06-software

[trz42]

bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3

[eessi-bot[bot]]

Updates by the bot instance eessi-bot-mc-aws (click for details)

• received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from trz42

  • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3

• handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:

  • submitted job 10793, for details & status see https://github.com/EESSI/software-layer/pull/577#issuecomment-2112529646

[eessi-bot[bot]]

Updates by the bot instance eessi-bot-mc-azure (click for details)

• received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from trz42

  • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3

• handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:

  • no jobs were submitted

[eessi-bot[bot]]

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.05/pr_577/10793

date	job status	comment
May 15 13:27:32 UTC 2024	submitted	job id 10793 awaits release by job manager
May 15 13:27:49 UTC 2024	released	job awaits launch by Slurm scheduler
May 15 13:28:51 UTC 2024	running	job 10793 is running
May 15 13:33:56 UTC 2024	finished	:cry: FAILURE (click triangle for details) Details :white_check_mark: job output file slurm-10793.out :x: found message matching ERROR: :white_check_mark: no message matching FAILED: :white_check_mark: no message matching required modules missing: :white_check_mark: found message(s) matching No missing installations :white_check_mark: found message matching .tar.gz created! Artefacts eessi-2023.06-software-linux-x86_64-amd-zen3-1715779762.tar.gz size: 0 MiB (402291 bytes) entries: 210 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all scikit-build-core/0.9.3-GCCcore-13.2.0.lua software under 2023.06/software/linux/x86_64/amd/zen3/software scikit-build-core/0.9.3-GCCcore-13.2.0 other under 2023.06/software/linux/x86_64/amd/zen3 no other files in tarball
May 15 13:33:56 UTC 2024	test result	:grin: SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted) Details :white_check_mark: job output file slurm-10793.out :x: found message matching ERROR: :white_check_mark: no message matching [\s*FAILED\s*].*Ran .* test case

[trz42]

bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3

[eessi-bot[bot]]

Updates by the bot instance eessi-bot-mc-aws (click for details)

• received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from trz42

  • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3

• handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:

  • submitted job 10794, for details & status see https://github.com/EESSI/software-layer/pull/577#issuecomment-2112596190

[eessi-bot[bot]]

Updates by the bot instance eessi-bot-mc-azure (click for details)

• received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from trz42

  • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3

• handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:

  • no jobs were submitted

[eessi-bot[bot]]

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.05/pr_577/10794

date	job status	comment
May 15 13:49:09 UTC 2024	submitted	job id 10794 awaits release by job manager
May 15 13:50:00 UTC 2024	released	job awaits launch by Slurm scheduler
May 15 13:51:02 UTC 2024	running	job 10794 is running
May 15 14:34:46 UTC 2024	finished	:grin: SUCCESS (click triangle for details) Details :white_check_mark: job output file slurm-10794.out :white_check_mark: no message matching ERROR: :white_check_mark: no message matching FAILED: :white_check_mark: no message matching required modules missing: :white_check_mark: found message(s) matching No missing installations :white_check_mark: found message matching .tar.gz created! Artefacts eessi-2023.06-software-linux-x86_64-amd-zen3-1715783356.tar.gz size: 47 MiB (49816382 bytes) entries: 980 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all GROMACS/2024.1-foss-2023b.lua scikit-build-core/0.9.3-GCCcore-13.2.0.lua software under 2023.06/software/linux/x86_64/amd/zen3/software GROMACS/2024.1-foss-2023b scikit-build-core/0.9.3-GCCcore-13.2.0 other under 2023.06/software/linux/x86_64/amd/zen3 no other files in tarball
May 15 14:34:46 UTC 2024	test result	:grin: SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted) Details :white_check_mark: job output file slurm-10794.out :white_check_mark: no message matching ERROR: :white_check_mark: no message matching [\s*FAILED\s*].*Ran .* test case

[ocaisa]

@trz42 Can you do your check of the log to see if this worked as expected. I would really like to get #576 merged ASAP

[trz42]

@trz42 Can you do your check of the log to see if this worked as expected. I would really like to get #576 merged ASAP

Checked the logs. Didn't find anything that lists the "build" time of the GROMACS executable. I'd say, just go ahead with deploying #576

[trz42]

Obsolete.