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Molecular dynamics proxy application based on Kokkos

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These are the first updates to the SNAP routine. Here, we are porting the SNAP routine from LAMMPS to ExaMiniMD. This is a work in progress , so , do...

Don't merge yet. This is an example of using the new duplicated memory feature in Kokkos as an alternative to thread atomics, see https://github.com/kokkos/kokkos/pull/1225 and https://github.com/kokkos/kokkos/issues/825. For OpenMP or PThreads...

enhancement

We need to add some intrinsic correctness checks, as well as statistical gold file comparisons.

feature request
ECP Milestone

The OpenMP package in LAMMPS utilizes data replication to avoid write conflicts on the force array. This works very well for small amounts of threads. It may be worthwhile to...

feature request

This is a longer term goal. We need to add both the short range coulomb interaction as well as a long range interaction.

feature request

This is an issue to add the EAM force field.

feature request
ECP Milestone

We need a representation of bond and angle forces as they are commonplace in bio simulations.

feature request

- Updates initial implementation - Removes Makefile - Adds more CMake options - Rebases on top of master