ml_drought
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20 hours ago •
ECMWFCode4Earth
ECMWFCode4Earth
pytest failing to run. crashing with `..%`
(crop) ➜ ml_drought git:(exporters/seas5) pytest
================================================================ test session starts =================================================================
platform darwin -- Python 3.7.0, pytest-4.5.0, py-1.8.0, pluggy-0.11.0
rootdir: /Users/tommylees/github/ml_drought, inifile: pytest.ini
plugins: flake8-1.0.4
collected 83 items
run.py s [ 1%]
src/__init__.py s [ 2%]
src/run.py s [ 3%]
src/utils.py . [ 4%]
src/exporters/__init__.py . [ 6%]
src/exporters/all_valid_s5.py . [ 7%]
src/exporters/base.py . [ 8%]
src/exporters/cds.py . [ 9%]
src/exporters/chirps.py s [ 10%]
src/exporters/planetOS.py s [ 12%]
src/exporters/s5.py . [ 13%]
src/exporters/vhi.py s [ 14%]
src/preprocess/__init__.py s [ 15%]
src/preprocess/base.py s [ 16%]
src/preprocess/chirps.py . [ 18%]
src/preprocess/utils.py s [ 19%]
src/preprocess/vhi.py s [ 20%]
tests/__init__.py s [ 21%]
tests/test_run.py s.... [ 27%]
tests/exporters/__init__.py s [ 28%]
tests/exporters/test_base.py s. [ 31%]
tests/exporters/test_cds.py ......... [ 42%]
tests/exporters/test_chirps.py s.... [ 48%]
tests/exporters/test_planetOS.py s... [ 53%]
tests/exporters/test_s5.py ...FFFFFFFFF [ 67%]
tests/exporters/test_vhi.py s..... [ 74%]
tests/preprocess/__init__.py s [ 75%]
tests/preprocess/test_base.py ..% (crop) ➜ ml_drought git:(exporters/seas5)
But it works on other instances (gcloud) ? huh?!
https://stackoverflow.com/questions/34835462/py-test-terminates-without-completing-with-a-terminal
The error has to do with MPI (called in XEMSF)
Fatal error in MPI_Init_thread: Other MPI error, error stack:
MPIR_Init_thread(474)..............:
MPID_Init(190).....................: channel initialization failed
MPIDI_CH3_Init(89).................:
MPID_nem_init(320).................:
MPID_nem_tcp_init(173).............:
MPID_nem_tcp_get_business_card(420):
MPID_nem_tcp_init(379).............: gethostbyname failed, Tommys-MacBook-Air.local (errno 1)
[unset]: write_line error; fd=-1 buf=:cmd=abort exitcode=3191311
:
system msg for write_line failure : Bad file descriptor
https://github.com/conda-forge/fenics-feedstock/issues/44 https://github.com/conda-forge/fenics-feedstock/issues/44#issuecomment-338164343 https://stackoverflow.com/questions/23112515/mpich2-gethostbyname-failed