Esben Jannik Bjerrum
Esben Jannik Bjerrum
Pull request to examine work in progress
Added slides from my UGM presentation
where regular expression would not be recreated correctly. _re is recreated from ._tokens and ._regex_tokens if tokens are dynamically added with add_tokens, but these properties were not correctly saved and...
When a system is aromatic, the shown double-bonds may not correspond to the ones made on the molecular graph object. This shows as a shift in the double-single bond pattern...
StereoNone and StereoTrans double bonds renders the same.
Adding more than three single atoms when there's no bond leads to a crash of the editor, as the bond-list is empty.
When editing the molecule, the stereochemical tags around e.g. cis-trans bonds are not recalculated. This can result in them being incorrect. The sanitization code also does not trigger a recalculation.
There's no way to correct or set explicit H's. This can disturb kekulization in e.g. in aromatic heterocycles.
With a molecule with R/S and wedges, the wedge disappear when recalculating coordinates. It returns when cleaning chemistry or continue drawing. Likely the _CIPCode gets stripped from he drawing mol...