ols4
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EBISPOT
Version 4 of the EMBL-EBI Ontology Lookup Service (OLS)
In OLS3 we have a complicated `/api/search` endpoint: @RequestMapping(path = "/api/search", produces = {MediaType.APPLICATION_JSON_VALUE}, method = RequestMethod.GET) public void search( @RequestParam("q") String query, @RequestParam(value = "ontology", required = false) Collection...
Punning is where the same URI is used for, say, both a Class and an Individual. Currently, this is handled in owl2json by creating both an entry in "classes" and...
* Pick around 5 ontologies including EFO - @henrietteharmse which ones shall we do? * Collect some JSON output from the current OLS3 API and upload to this repo for...
…p logging on backend.
**Describe the bug** The CAO ontology terms in OLS have incorrectly formatted short_form codes throughout. **To Reproduce** Steps to reproduce the behavior: 1. Go to https://www.ebi.ac.uk/ols4/api/ontologies/cao/terms?lang=en 2. Scroll down to...
See for example: https://www.ebi.ac.uk/ols4/ontologies/hp/properties/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252Fuberon%252Fcore%2523indirectly_supplies In the breadcrumbs at the top of the page you can see `indirectly:supplies` which should be `indirectly_supplies`. This is because the CURIE is wrong, visible in...
**Describe the bug** Errors written out such as the following: ``` { "error": "Whitelabel Error PageThis application has no explicit mapping for /error, so you are seeing this as a...