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OLS4 does not provice baseUris for GO

Open afg1 opened this issue 1 year ago • 4 comments

Describe the bug We have a pipeline which looks at the following endpoint: https://www.ebi.ac.uk/ols4/api/ontologies/GO

Comparing this to the OLS3 version (https://www.ebi.ac.uk/ols/api/ontologies/GO), the baseUris entry under the config is now empty, causing our pipeline to crash.

To Reproduce

  1. run curl https://www.ebi.ac.uk/ols/api/ontologies/GO
  2. run curl https://www.ebi.ac.uk/ols4/api/ontologies/GO
  3. compare the entries in ['config']['baseUris']

Expected behavior I expected the baseUris to be in the same place, but they don't appear to be anywhere in the returned JSON from OLS4

A quick check with some other ontologies (SO, UBERON, EFO) shows this is not across the board - SO and UBERON show the same problem as GO, but EFO has baseUris in the place I expected

afg1 avatar Oct 17 '23 12:10 afg1