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Multiple ontologies are loading empty in OLS - gaz, hom, ma, zfs, fix, rex, aeo, ehdaa2, fma

Open haideriqbal opened this issue 1 week ago • 3 comments

Following ontologies are loading empty in the OLS:

gaz, hom, ma, zfs, fix, rex, aeo, ehdaa2, fma

For example: https://www.ebi.ac.uk/ols4/ontologies/fma

haideriqbal avatar Nov 20 '25 17:11 haideriqbal

Getting the following error when trying to access their owl file:

This XML file does not appear to have any style information associated with it. The document tree is shown below.
<Error>
<Code>AccessDenied</Code>
<Message>Access Denied</Message>
<RequestId>P4F5DPGMW95HVZ8E</RequestId>
<HostId>FRGhVYgTJog3JTzHtCgJC9B6FjwiaCn+KzX+N9PCKrZ33BIeyG9zNgbTcLcEToaHVX2Lm80r9NRfBuQj7+aTc4f/uYSJCL9H</HostId>
</Error>

Seems like an issue with berkleybop

http://ontologies.berkeleybop.org/gaz.owl http://ontologies.berkeleybop.org/aeo.owl http://ontologies.berkeleybop.org/fma.owl http://ontologies.berkeleybop.org/hom.owl http://ontologies.berkeleybop.org/ma.owl http://ontologies.berkeleybop.org/zfs.owl http://ontologies.berkeleybop.org/ehdaa2.owl http://ontologies.berkeleybop.org/fix.owl http://ontologies.berkeleybop.org/rex.owl

haideriqbal avatar Nov 20 '25 17:11 haideriqbal

Here is an important issue to track in this context:

https://github.com/OBOFoundry/OBOFoundry.github.io/issues/1446

the berkley servers have now been shut down, so any ontology that was still using it (after a 4 year announcement) need to figure out where to host!

cc @kltm

matentzn avatar Nov 20 '25 17:11 matentzn

We need better safeguards in OLS not to load such ontologies at all, which then results in a bad user experience.

haideriqbal avatar Nov 20 '25 18:11 haideriqbal