goci
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EBISPOT
GWAS Catalog Ontology and Curation Infrastructure
**Description:** Submission `665a1272f2bba900017a9f6f` failed validation due to exceeded disk quota in the `/homes/gwas_lsf` directory. See https://github.com/EBISPOT/goci/issues/1341 **Proposed Solution:** To prevent future occurrences, set up a cron job that regularly cleans...
Setting curator - the curators are listed in a random order in the dropdown, it should be alphabetical. We discussed removing members no longer working on the project, but this...
Curators find it confusing to know whether they are on the Publication details page or Submission details page since the headers both have similar headers i.e. Publication: PMID123456. The header...
I had to create a few BoWs while investigating the YAML issue. Sorry about the inconvenience and thanks. ``` GCP000881 GCP000882 GCP000884 GCP000885 GCP000888 GCP000892 ```
Based on the [previous round of analysis](https://app.zenhub.com/workspaces/gwas-59df823c4a6feb3786810391/issues/gh/ebispot/goci/1191), we concluded that sometimes the Ensembl API fails silently and does not return a response. In the daily mapping, this causes mapping annotated...
I found many GCSTs across several different GCST parent brackets which do not have yamls, eg: 09/08/24 - http://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/GCST90445001-GCST90446000/GCST90445932/ 18/07/24 - http://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/GCST90435001-GCST90436000/GCST90435443/ 10/08/24 - http://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/GCST90446001-GCST90447000/GCST90446130/ 12/06/24 - http://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/GCST90432001-GCST90433000/GCST90432041/ 08/08/24 -...
The data in this GCP is not eligible for inclusion in the GWAS Catalog because it relates to a bacterial (not human) GWAS. The GCP and its submission need to...
This GCP contains summary statistics that the author no longer wants to make available - the GCP as well as the submission it contains should be deleted.
Recently I increased its mem to 8G but it still fails. Investigate the sync algorithm, something is off since 25 Jul. Exit Code: | 0:0 -- | -- Exit state:...
The queueing table (hq.db) we are using includes the information about: GCST - format - harmonisation status - in prog status - priority Based on this, we want to have...
