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Published 20 hours ago • verified publisher icon EBISPOT

yaml file-types need changing from non-GWAS-SSF to GWAS-SSF

Open earlEBI opened this issue 10 months ago • 4 comments

Submission id '662ca8a7a6e7cc0001fe7acc' was pushed through validation due to 0 p-values.

Yaml file-type need to be changed from non-GWAS-SSF to GWAS-SSF v1 for all GCSTs.

GCST90428438 - GCST90428399

earlEBI avatar Apr 30 '24 10:04 earlEBI

That's already the case for the mentioned studies.

karatugo avatar May 13 '24 13:05 karatugo

For example, this study is in the public ftp and has the correct file type. https://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/GCST90428001-GCST90429000/GCST90428399/

karatugo avatar May 13 '24 13:05 karatugo

Expect missing yaml files tomorrow in the public ftp.

karatugo avatar May 13 '24 13:05 karatugo

I'm a bit confused as to why the file-type is correct after pushing through. Maybe is due to yamls not being generated at point of validation. Will confirm tomorrow if the 2nd yaml appears and is correct.

earlEBI avatar May 13 '24 14:05 earlEBI

Yamls look ok.

earlEBI avatar May 15 '24 08:05 earlEBI