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Saerching for MONDO_00000001 id in EFO (which is the same content than EFO_OTAR_PROFILES in this version 3.74

Open corinabioinformatic opened this issue 3 weeks ago • 0 comments

Hi Opentargets team! I was looking into the differences between EFO releases, and since the size of EFO_otar_profile and EFO owl files where about the same , I though the content would be the same (more than slim?) I look at the file (mapping_efo_mondo)[] mentioned in the README of this release , and I see there is a MONDO term root to map to EFO --> MONDO_00000001.

But when I look for it (using owl or json files, and neo4j or protege tools) I cannot find the id MONDO_00000001 , but yes to the mapped EFO_0000408.

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  1. should i consider that the mapped MONDOids may wont appear as node.lbl? only as efo_id?
  2. EFO_0000408 <- also i noticed in the "efo_otar_slim" this term does not appear. am I right?
  3. is it any stats summary where i could see number of nodes and relationships different in each different release for the version_374?

Again many thanks for this big effort!

Note: this is in line to this other issue (missing documentation or README for these releases)

corinabioinformatic avatar Feb 03 '25 22:02 corinabioinformatic