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Nested foaf_depiction comments not in exported json or on ols term page

Open srobb1 opened this issue 4 years ago • 0 comments

Hello. I would like my comments specific to my depiction to be included in the ols json term file and on the ols term page.

I have comments nested with my foaf_depiction. These comments are not appearing on the ols term page, nor are they appearing in the ols json file:

Here is the json from the OLS term page

Subset of term with nested comment:

   <owl:Axiom>
        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PLANA_0000006"/>
        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/foaf_depiction"/>
        <owl:annotatedTarget rdf:resource="http://purl.obolibrary.org/obo/plana/images/stage6.png"/>
        <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Depicted by field contains hematoxylin and eosin staining section of a stage 6 embryo. Scale bar = 100um</rdfs:comment>
    </owl:Axiom>

Complete term:

    <!-- http://purl.obolibrary.org/obo/PLANA_0000006 -->

    <owl:Class rdf:about="http://purl.obolibrary.org/obo/PLANA_0000006">
        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000068"/>
        <rdfs:subClassOf>
            <owl:Restriction>
                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/PLANA_0007536"/>
                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PLANA_0000116"/>
            </owl:Restriction>
        </rdfs:subClassOf>
        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A stage of Smed embryonic development defined by a unique gene expression signature and morphology, 7 - 9 days post-egg capsule deposition at 20˚C. Organogenesis and morphogenesis. Definitive organ formation. Temporary embryonic cell types degenerate. Embryo elongation.</obo:IAO_0000115>
        <obo:foaf_depiction rdf:resource="http://purl.obolibrary.org/obo/plana/images/stage6.png"/>
        <oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://orcid.org/0000-0003-2569-1939 | https://orcid.org/0000-0002-7535-4902</oboInOwl:created_by>
        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:28072387</oboInOwl:hasDbXref>
        <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string"></oboInOwl:hasExactSynonym>
        <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Schmidtea_mediterranea_Developmental_Stages</oboInOwl:hasOBONamespace>
        <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string"></rdfs:comment>
        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Stage 6</rdfs:label>
    </owl:Class>
    <owl:Axiom>
        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PLANA_0000006"/>
        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A stage of Smed embryonic development defined by a unique gene expression signature and morphology, 7 - 9 days post-egg capsule deposition at 20˚C. Organogenesis and morphogenesis. Definitive organ formation. Temporary embryonic cell types degenerate. Embryo elongation.</owl:annotatedTarget>
        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PMID:28072387</oboInOwl:hasDbXref>
    </owl:Axiom>
    <owl:Axiom>
        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PLANA_0000006"/>
        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/foaf_depiction"/>
        <owl:annotatedTarget rdf:resource="http://purl.obolibrary.org/obo/plana/images/stage6.png"/>
        <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Depicted by field contains hematoxylin and eosin staining section of a stage 6 embryo. Scale bar = 100um</rdfs:comment>
    </owl:Axiom>

Can we get this field configured to display on the term page and in the json? Is there a configuration page I can make changes and submit a pull request?

Thank you, Sofia

srobb1 avatar Apr 14 '20 16:04 srobb1