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Published 20 hours ago • verified publisher icon EBI-Metagenomics

Add binning to assembly pipeline

Open rdfinn opened this issue 7 years ago • 0 comments

Add simple binning to the assembly pipeline:

  • [ ] Install bbmap tool
  • [ ] Install MetaBat
  • [ ] See if we can get QC files from metaspades
  • [ ] map sequences to assembly, CWL implementation
  • [ ] metabat CWL implementation
  • [ ] Investigate MaxBins and MetaWatt
  • [ ] Should we use CheckM or something similar to assess quality?

rdfinn avatar Jun 07 '17 16:06 rdfinn