EA2106-Universite-Francois-Rabelais

Problem with the removal of the Bio.Alphabet module in Biopython 1.78 since September 2020

6

Dear Olga, for newer installations, I suggest you to comment line 11 ``` #from Bio.Alphabet import IUPAC ``` and modify the syntax in the definition of gfa_to_contigs and gfa2_to_contigs functions,...

Dear @gpertea , we found a strange behavior while creating databases for snpEff (https://github.com/pcingola/SnpEff). We used gffread to convert a .gff3 file into a .gtf format. But it appears that...

redirect sam to standard output for piping

3

Dear ModularAligner team, thank you very much for your great job setting up a new read aligner. In order to include it into already existing pipelines, could it be possible...