EA2106-Universite-Francois-Rabelais

I also had an issue with fasta.seq.tostring, which was fixed with: ``` def add_refcoord_to_res_file(): if len(args.refcoord) == 0: return lib = args.refcoord[0] chrid = {} chrlen = [] fasta_seq =...

I installed it through conda: conda install -c olga24912 -c conda-forge -c bioconda sgtk. So the conda environment contains: ``` channels: - olga24912 - bioconda - conda-forge - defaults dependencies:...

Oh sorry, i did not check the latest version number. I was too confident on the conda env! I am working under Linux RedHatEnterpriseServer 7.2. I can try to compile...

ok don't worry, I took the latest binaries, apparently worked like a charm. Thanks!

Hi, I have a related question: how to you see "colors" in the final gfa1/gfa2 output? I ran cuttelfish with `-l paths.txt`, successfully producing a large gfa file. How can...

Thanks @rob-p , @rickbeeloo & @jamshed-k for the interesting discussion. I am new to the gfa file formats and looking for ways to extract relevant biological information. I agree with...