Can't install on Apple M1 chip

[smortezah]

Trying to install on Apple M1 chip, it throws "wrong architecture" error.

[jianshu93]

I have a different error when running pip install MulticoreRSNE:

Building wheel for MulticoreTSNE (setup.py) ... error ERROR: Command errored out with exit status 1: command: /opt/homebrew/opt/[email protected]/bin/python3.9 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/mr/8qybn91j5fgdbrcdmq7ckftw0000gn/T/pip-install-wgg624pd/multicoretsne_3ce9ee427adb41349f64f2af4866a3aa/setup.py'"'"'; file='"'"'/private/var/folders/mr/8qybn91j5fgdbrcdmq7ckftw0000gn/T/pip-install-wgg624pd/multicoretsne_3ce9ee427adb41349f64f2af4866a3aa/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(file) if os.path.exists(file) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/mr/8qybn91j5fgdbrcdmq7ckftw0000gn/T/pip-wheel-2vay8_aj cwd: /private/var/folders/mr/8qybn91j5fgdbrcdmq7ckftw0000gn/T/pip-install-wgg624pd/multicoretsne_3ce9ee427adb41349f64f2af4866a3aa/ Complete output (28 lines): running bdist_wheel running build running build_py creating build creating build/lib.macosx-12-arm64-3.9 creating build/lib.macosx-12-arm64-3.9/MulticoreTSNE copying MulticoreTSNE/init.py -> build/lib.macosx-12-arm64-3.9/MulticoreTSNE creating build/lib.macosx-12-arm64-3.9/MulticoreTSNE/tests copying MulticoreTSNE/tests/init.py -> build/lib.macosx-12-arm64-3.9/MulticoreTSNE/tests copying MulticoreTSNE/tests/test_base.py -> build/lib.macosx-12-arm64-3.9/MulticoreTSNE/tests running egg_info writing MulticoreTSNE.egg-info/PKG-INFO writing dependency_links to MulticoreTSNE.egg-info/dependency_links.txt writing requirements to MulticoreTSNE.egg-info/requires.txt writing top-level names to MulticoreTSNE.egg-info/top_level.txt listing git files failed - pretending there aren't any reading manifest file 'MulticoreTSNE.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file 'MulticoreTSNE.egg-info/SOURCES.txt' running build_ext cmake version 3.21.4

CMake suite maintained and supported by Kitware (kitware.com/cmake). CMake Error: Unknown argument -- CMake Error: Run 'cmake --help' for all supported options.

ERROR: Cannot generate Makefile. See above errors.

ERROR: Failed building wheel for MulticoreTSNE Running setup.py clean for MulticoreTSNE Failed to build MulticoreTSNE Installing collected packages: MulticoreTSNE DEPRECATION: Configuring installation scheme with distutils config files is deprecated and will no longer work in the near future. If you are using a Homebrew or Linuxbrew Python, please see discussion at https://github.com/Homebrew/homebrew-core/issues/76621 Running setup.py install for MulticoreTSNE ... error ERROR: Command errored out with exit status 1: command: /opt/homebrew/opt/[email protected]/bin/python3.9 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/mr/8qybn91j5fgdbrcdmq7ckftw0000gn/T/pip-install-wgg624pd/multicoretsne_3ce9ee427adb41349f64f2af4866a3aa/setup.py'"'"'; file='"'"'/private/var/folders/mr/8qybn91j5fgdbrcdmq7ckftw0000gn/T/pip-install-wgg624pd/multicoretsne_3ce9ee427adb41349f64f2af4866a3aa/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(file) if os.path.exists(file) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/mr/8qybn91j5fgdbrcdmq7ckftw0000gn/T/pip-record-zs84f693/install-record.txt --single-version-externally-managed --compile --install-headers /opt/homebrew/include/python3.9/MulticoreTSNE cwd: /private/var/folders/mr/8qybn91j5fgdbrcdmq7ckftw0000gn/T/pip-install-wgg624pd/multicoretsne_3ce9ee427adb41349f64f2af4866a3aa/ Complete output (30 lines): running install /opt/homebrew/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py creating build creating build/lib.macosx-12-arm64-3.9 creating build/lib.macosx-12-arm64-3.9/MulticoreTSNE copying MulticoreTSNE/init.py -> build/lib.macosx-12-arm64-3.9/MulticoreTSNE creating build/lib.macosx-12-arm64-3.9/MulticoreTSNE/tests copying MulticoreTSNE/tests/init.py -> build/lib.macosx-12-arm64-3.9/MulticoreTSNE/tests copying MulticoreTSNE/tests/test_base.py -> build/lib.macosx-12-arm64-3.9/MulticoreTSNE/tests running egg_info writing MulticoreTSNE.egg-info/PKG-INFO writing dependency_links to MulticoreTSNE.egg-info/dependency_links.txt writing requirements to MulticoreTSNE.egg-info/requires.txt writing top-level names to MulticoreTSNE.egg-info/top_level.txt listing git files failed - pretending there aren't any reading manifest file 'MulticoreTSNE.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file 'MulticoreTSNE.egg-info/SOURCES.txt' running build_ext cmake version 3.21.4

CMake suite maintained and supported by Kitware (kitware.com/cmake).
CMake Error: Unknown argument --
CMake Error: Run 'cmake --help' for all supported options.

ERROR: Cannot generate Makefile. See above errors.
----------------------------------------

ERROR: Command errored out with exit status 1: /opt/homebrew/opt/[email protected]/bin/python3.9 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/mr/8qybn91j5fgdbrcdmq7ckftw0000gn/T/pip-install-wgg624pd/multicoretsne_3ce9ee427adb41349f64f2af4866a3aa/setup.py'"'"'; file='"'"'/private/var/folders/mr/8qybn91j5fgdbrcdmq7ckftw0000gn/T/pip-install-wgg624pd/multicoretsne_3ce9ee427adb41349f64f2af4866a3aa/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(file) if os.path.exists(file) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/mr/8qybn91j5fgdbrcdmq7ckftw0000gn/T/pip-record-zs84f693/install-record.txt --single-version-externally-managed --compile --install-headers /opt/homebrew/include/python3.9/MulticoreTSNE Check the logs for full command output.

No idea how to fix it.

Thanks,

Jianshu

[ladcva]

I have the same problem on my M1 Macbook with anaconda miniforge.

pip install MulticoreTSNE

Output: `pip install MulticoreTSNE 1 х │ 11s │ env_tensorflow Py │ 12:27:11 Collecting MulticoreTSNE Using cached MulticoreTSNE-0.1.tar.gz (20 kB) Preparing metadata (setup.py) ... done Requirement already satisfied: numpy in /opt/homebrew/Caskroom/miniforge/base/envs/env_tensorflow/lib/python3.9/site-packages (from MulticoreTSNE) (1.22.1) Requirement already satisfied: cffi in /opt/homebrew/Caskroom/miniforge/base/envs/env_tensorflow/lib/python3.9/site-packages (from MulticoreTSNE) (1.15.0) Requirement already satisfied: pycparser in /opt/homebrew/Caskroom/miniforge/base/envs/env_tensorflow/lib/python3.9/site-packages (from cffi->MulticoreTSNE) (2.21) Building wheels for collected packages: MulticoreTSNE Building wheel for MulticoreTSNE (setup.py) ... error ERROR: Command errored out with exit status 1: command: /opt/homebrew/Caskroom/miniforge/base/envs/env_tensorflow/bin/python3.9 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/3m/s8wmrd5s1vsd0p7s_qpnlmr80000gn/T/pip-install-qhcyvm81/multicoretsne_309fe319d0ab455e8ddf77fe14158648/setup.py'"'"'; file='"'"'/private/var/folders/3m/s8wmrd5s1vsd0p7s_qpnlmr80000gn/T/pip-install-qhcyvm81/multicoretsne_309fe319d0ab455e8ddf77fe14158648/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(file) if os.path.exists(file) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/3m/s8wmrd5s1vsd0p7s_qpnlmr80000gn/T/pip-wheel-4igemkjv cwd: /private/var/folders/3m/s8wmrd5s1vsd0p7s_qpnlmr80000gn/T/pip-install-qhcyvm81/multicoretsne_309fe319d0ab455e8ddf77fe14158648/ Complete output (27 lines): running bdist_wheel running build running build_py creating build creating build/lib.macosx-11.0-arm64-3.9 creating build/lib.macosx-11.0-arm64-3.9/MulticoreTSNE copying MulticoreTSNE/init.py -> build/lib.macosx-11.0-arm64-3.9/MulticoreTSNE creating build/lib.macosx-11.0-arm64-3.9/MulticoreTSNE/tests copying MulticoreTSNE/tests/init.py -> build/lib.macosx-11.0-arm64-3.9/MulticoreTSNE/tests copying MulticoreTSNE/tests/test_base.py -> build/lib.macosx-11.0-arm64-3.9/MulticoreTSNE/tests running egg_info writing MulticoreTSNE.egg-info/PKG-INFO writing dependency_links to MulticoreTSNE.egg-info/dependency_links.txt writing requirements to MulticoreTSNE.egg-info/requires.txt writing top-level names to MulticoreTSNE.egg-info/top_level.txt reading manifest file 'MulticoreTSNE.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file 'MulticoreTSNE.egg-info/SOURCES.txt' running build_ext cmake version 3.22.2

CMake suite maintained and supported by Kitware (kitware.com/cmake). CMake Error: Unknown argument -- CMake Error: Run 'cmake --help' for all supported options.

ERROR: Cannot generate Makefile. See above errors.

ERROR: Failed building wheel for MulticoreTSNE Running setup.py clean for MulticoreTSNE Failed to build MulticoreTSNE Installing collected packages: MulticoreTSNE Running setup.py install for MulticoreTSNE ... error ERROR: Command errored out with exit status 1: command: /opt/homebrew/Caskroom/miniforge/base/envs/env_tensorflow/bin/python3.9 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/3m/s8wmrd5s1vsd0p7s_qpnlmr80000gn/T/pip-install-qhcyvm81/multicoretsne_309fe319d0ab455e8ddf77fe14158648/setup.py'"'"'; file='"'"'/private/var/folders/3m/s8wmrd5s1vsd0p7s_qpnlmr80000gn/T/pip-install-qhcyvm81/multicoretsne_309fe319d0ab455e8ddf77fe14158648/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(file) if os.path.exists(file) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/3m/s8wmrd5s1vsd0p7s_qpnlmr80000gn/T/pip-record-odgm4fvk/install-record.txt --single-version-externally-managed --compile --install-headers /opt/homebrew/Caskroom/miniforge/base/envs/env_tensorflow/include/python3.9/MulticoreTSNE cwd: /private/var/folders/3m/s8wmrd5s1vsd0p7s_qpnlmr80000gn/T/pip-install-qhcyvm81/multicoretsne_309fe319d0ab455e8ddf77fe14158648/ Complete output (29 lines): running install /opt/homebrew/Caskroom/miniforge/base/envs/env_tensorflow/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py creating build creating build/lib.macosx-11.0-arm64-3.9 creating build/lib.macosx-11.0-arm64-3.9/MulticoreTSNE copying MulticoreTSNE/init.py -> build/lib.macosx-11.0-arm64-3.9/MulticoreTSNE creating build/lib.macosx-11.0-arm64-3.9/MulticoreTSNE/tests copying MulticoreTSNE/tests/init.py -> build/lib.macosx-11.0-arm64-3.9/MulticoreTSNE/tests copying MulticoreTSNE/tests/test_base.py -> build/lib.macosx-11.0-arm64-3.9/MulticoreTSNE/tests running egg_info writing MulticoreTSNE.egg-info/PKG-INFO writing dependency_links to MulticoreTSNE.egg-info/dependency_links.txt writing requirements to MulticoreTSNE.egg-info/requires.txt writing top-level names to MulticoreTSNE.egg-info/top_level.txt reading manifest file 'MulticoreTSNE.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file 'MulticoreTSNE.egg-info/SOURCES.txt' running build_ext cmake version 3.22.2

CMake suite maintained and supported by Kitware (kitware.com/cmake).
CMake Error: Unknown argument --
CMake Error: Run 'cmake --help' for all supported options.

ERROR: Cannot generate Makefile. See above errors.
----------------------------------------

ERROR: Command errored out with exit status 1: /opt/homebrew/Caskroom/miniforge/base/envs/env_tensorflow/bin/python3.9 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/3m/s8wmrd5s1vsd0p7s_qpnlmr80000gn/T/pip-install-qhcyvm81/multicoretsne_309fe319d0ab455e8ddf77fe14158648/setup.py'"'"'; file='"'"'/private/var/folders/3m/s8wmrd5s1vsd0p7s_qpnlmr80000gn/T/pip-install-qhcyvm81/multicoretsne_309fe319d0ab455e8ddf77fe14158648/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(file) if os.path.exists(file) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/3m/s8wmrd5s1vsd0p7s_qpnlmr80000gn/T/pip-record-odgm4fvk/install-record.txt --single-version-externally-managed --compile --install-headers /opt/homebrew/Caskroom/miniforge/base/envs/env_tensorflow/include/python3.9/MulticoreTSNE Check the logs for full command output.`

[wjyzidane]

same issue here on MacBook Pro, even if I use "pip3 install cmake==3.18.4".

[EmanuelCastanho]

Same issue

[b-y-f]

CMake Error: Unknown argument --

[NicolasSompairac]

This has to be the most ridiculous problem I have ever seen while compiling a package... I also had this error on my Mac and couldn't understand why. A simple cmake --help solved it.

The problem comes from the fact that the cmake command requires -S to be used during the build to point to the source path. So to correct this on Mac, simply modify the line 55 of "setyp.py" and replace '--' to '-S'. The package should compile withouth any error after that. @b-y-f , @wjyzidane , @jianshu93 , @EmanuelCastanho , @ladcva Hope this helps you :)

[jianshu93]

Many thanks！

Jianshu

[SebastianMHJohn]

For me conda worked fine

https://anaconda.org/conda-forge/multicore-tsne

Best wishes

[ScienceComputing]

Greetings!

I use the python 3.11.1 and pip 23.1.2 to install the MulticoreTSNE and cmake 3.26.4. But my Jupyter lab outputs the following error messages. Do you know how to solve it? Look forward to learning from your insights!

Thank you so much in advance.

error: subprocess-exited-with-error

× python setup.py bdist_wheel did not run successfully. │ exit code: 1 ╰─> [27 lines of output] running bdist_wheel running build running build_py creating build creating build/lib.macosx-10.9-universal2-cpython-311 creating build/lib.macosx-10.9-universal2-cpython-311/MulticoreTSNE copying MulticoreTSNE/init.py -> build/lib.macosx-10.9-universal2-cpython-311/MulticoreTSNE creating build/lib.macosx-10.9-universal2-cpython-311/MulticoreTSNE/tests copying MulticoreTSNE/tests/init.py -> build/lib.macosx-10.9-universal2-cpython-311/MulticoreTSNE/tests copying MulticoreTSNE/tests/test_base.py -> build/lib.macosx-10.9-universal2-cpython-311/MulticoreTSNE/tests running egg_info writing MulticoreTSNE.egg-info/PKG-INFO writing dependency_links to MulticoreTSNE.egg-info/dependency_links.txt writing requirements to MulticoreTSNE.egg-info/requires.txt writing top-level names to MulticoreTSNE.egg-info/top_level.txt reading manifest file 'MulticoreTSNE.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file 'MulticoreTSNE.egg-info/SOURCES.txt' running build_ext cmake version 3.26.4

  CMake suite maintained and supported by Kitware (kitware.com/cmake).
  CMake Error: Unknown argument --
  CMake Error: Run 'cmake --help' for all supported options.
  
  ERROR: Cannot generate Makefile. See above errors.
  [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for MulticoreTSNE ERROR: Could not build wheels for MulticoreTSNE, which is required to install pyproject.toml-based projects

[ScienceComputing]

This has to be the most ridiculous problem I have ever seen while compiling a package... I also had this error on my Mac and couldn't understand why. A simple cmake --help solved it.

The problem comes from the fact that the cmake command requires -S to be used during the build to point to the source path. So to correct this on Mac, simply modify the line 55 of "setyp.py" and replace '--' to '-S'. The package should compile withouth any error after that. @b-y-f , @wjyzidane , @jianshu93 , @EmanuelCastanho , @ladcva Hope this helps you :)

Not very familiar with python. Where is setyp.py file and how to open it?

[Minazukiz]

For me conda worked fine

https://anaconda.org/conda-forge/multicore-tsne

Best wishes

It works for me. Thank you. My sys: Ubuntu 22.04

[Mandy525252]

For me conda worked fine

https://anaconda.org/conda-forge/multicore-tsne

Best wishes

It works for me,too! Mysys: Windows 11

[NicolasSompairac]

Not very familiar with python. Where is setyp.py file and how to open it?

@ScienceComputing Apologies for the delayed answer, I didn't follow this issue at all... Even if it probably months too late, I still prefer to answer just in case it helps :) If you follow the instructions to install from source in the ReadMe, you will end up downloading the github repo locally and installing from it via pip directly. The setup.py can be found in this downloaded folder and will be used when calling pip.