Dmitry Antipov

Hi. Thank you for noticing that the link is down, we'll fix it. However we did not upload these databases - by this link we shared only metaplasmidSPAdes' results and...

Hi. Could you please send us the spades.log file? (either to [email protected] or as attach here)

Hi Actually it is normal that metaviralSPAdes do not detect any viral-like contigs for some samples where there are no circular (and specific linear) paths with some conditions on coverage...

Yes, this looks like a case with multiple strains - we can see three bulges of similar length and a complex region  With lower coverage metaviralSPAdes could output one...

Terribly sorry, I've missed this question. Metaviral SPAdes was build upon metaplasmid. Both tools are based on iterative low covered edges removal with minor differences in graph simplification and contig...

Had exactly the issue with index size as @rsharris For the clarity I'd suggest to change the warning "For a multi-part index, no @SQ lines will be outputted. Please use...

@hasindu2008 Did not actually check since minimap's temporary files run out of my disk space(I have huge dataset, but majority of the alignments are multimappers I planned to filter piping...

According to the log, assembly is very fragmented - only 3280 bases in contigs longer than 1000bp (before chromosomal revomal stage), so there should not be reasonable output in any...

Hi, My first assumption about this crash would be running out of memory - can you check? How much memory was available?

Seen the same for those test data and likely I know what happened - I used literally empty csv file, and likely it does not match the required format -...