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First non-comment line in pluspf_20240904 inspect.txt is truncated
Example: In the inspect.txt file for pluspf_20240904 the first line after the comment appears to be missing information from the root down to the percentage of fragments of Pseudomonadaceae:
# Database options: nucleotide db, k = 35, l = 31
# Spaced mask = 11111111111111111111111111111111110011001100110011001100110011
# Toggle mask = 1110001101111110001010001100010000100111000110110101101000101101
# Total taxonomy nodes: 50593
# Table size: 16195339816
# Table capacity: 23122320457
# Min clear hash value = 0
3667153 4569112 F 135621 Pseudomonadaceae
4.03 652396501 160466546 G 286 Pseudomonas
Just a quick check to see if this is just in pluspf shows that there's more truncated in the inspect.txt file for viral_20240904:
# Database options: nucleotide db, k = 35, l = 31
# Spaced mask = 11111111111111111111111111111111110011001100110011001100110011
# Toggle mask = 1110001101111110001010001100010000100111000110110101101000101101
# Total taxonomy nodes: 27090
# Table size: 113675830
# Table capacity: 162177828
# Min clear hash value = 0
lassified Caudoviricetes
0.08 90030 90030 S 1161927 Pseudomonas phage Lu11
Regenerating the file with kraken2-inspect
resolves this.