kraken2
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Could not build the fungi database
I am trying to use the prebuilt Fungal database for the fungal diversity study.
I ran the following command. kraken2-build --download-library fungi --db fungi
After completion of the data processing. I am still not able to find the taxo.k2d file in the specific folder.
The program terminated with following error. Kraken2: database ("./fungi") does not contain necessary file taxo.k2d
After consecutive efforts and Download taxonomy files/folder, I am again getting another error
Command run : kraken2-build --build --db fungi --threads 46
Error. : ..../build_kraken2_db.sh: line 105: KRAKEN2_LOAD_FACTOR: unbound variable