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--paired end reads input not taking

Open saras224 opened this issue 2 years ago • 3 comments

Hi!! @BenLangmead @bgruening @Phhere I am getting this error: kraken2: --paired requires positive and even number filenames

when I am providing this command to the system: kraken2 --use-names --db /home/rakesh/minikraken_8GB_20200312/ --threads 10 --paired /home/rakesh/Subsampled_70bp_fastq/A1_R1.fq.gz /home/rakesh/Subsampled_70bp_fastq/A1_R2.fq.gz --report /home/rakesh/Documents/Kraken_out/A1_report --use-mpa-style /home/rakesh/Documents/Kraken_out/A1_mpa_style_rep --gzip-compressed

Can anyone help me resolving the error that I am making?

Thanks in Advance

saras224 avatar Jun 10 '22 05:06 saras224