Differing contents between source tar.gz files

[mmokrejs]

Hi, I am looking for a proper way to get the sources of Kraken. I see there is https://ccb.jhu.edu/software/kraken/dl/kraken-1.0.tgz and there is https://github.com/DerrickWood/kraken/archive/v1.0.tar.gz . But, the contents are different. Please fix the page https://ccb.jhu.edu/software/kraken/ to refer to the proper and current source file. It seems the source tar.gz on Github does not work properly (I think I heard that many times from others). So, the v1.1.tar.gz is probably also incomplete ... Please check what is in there and either point the main website to https://github.com/DerrickWood/kraken/archive/v1.1.tar.gz or make again manually a full tar.gz file. Thank you.

A partial check which I did shows the file at JHU contains more files. I did not care to check also in the other direction.

$ find jhu/kraken-1.0/ -type f | while read f; do diff -u $f github/kraken-1.0/$f | less; done
diff: github/kraken-1.0/jhu/kraken-1.0/src/Makefile: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/src/quickfile.hpp: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/src/krakenutil.cpp: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/src/make_seqid_to_taxid_map.cpp: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/src/db_sort.cpp: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/src/krakenutil.hpp: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/src/kmer_estimator.cpp: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/src/krakendb.hpp: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/src/db_shrink.cpp: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/src/quickfile.cpp: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/src/kraken_headers.hpp: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/src/seqreader.hpp: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/src/classify.cpp: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/src/krakendb.cpp: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/src/seqreader.cpp: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/scripts/kraken-mpa-report: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/scripts/scan_fasta_file.pl: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/scripts/build_kraken_db.sh: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/scripts/rsync_from_ncbi.pl: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/scripts/check_for_jellyfish.sh: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/scripts/read_merger.pl: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/scripts/clean_db.sh: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/scripts/upgrade_db.sh: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/scripts/kraken-translate: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/scripts/add_to_library.sh: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/scripts/kraken-report: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/scripts/download_taxonomy.shdiff: github/kraken-1.0/jhu/kraken-1.0/scripts/lookup_accession_numbers.pl: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/scripts/shrink_db.sh: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/scripts/standard_installation.sh: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/scripts/verify_gi_numbers.pl: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/scripts/krakenlib.pm: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/scripts/cp_into_tempfile.pl: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/scripts/kraken-build: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/scripts/report_gi_numbers.pl: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/scripts/kraken: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/scripts/kraken-filter: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/scripts/convert_gb_to_fa.pl: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/LICENSE: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/CHANGELOG: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/README.md: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/.git/packed-refs: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/.git/HEAD: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/.git/info/exclude: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/.git/index: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/.git/logs/HEAD: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/.git/logs/refs/heads/master: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/.git/logs/refs/remotes/origin/HEAD: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/.git/objects/pack/pack-5a6feddbbd33434eab4ad5a564d5db77dc8dc87e.pack: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/.git/objects/pack/pack-5a6feddbbd33434eab4ad5a564d5db77dc8dc87e.idx: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/.git/description: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/.git/hooks/post-update.sample: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/.git/hooks/applypatch-msg.sample: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/.git/hooks/commit-msg.sample: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/.git/hooks/pre-applypatch.sample: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/.git/hooks/pre-rebase.sample: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/.git/hooks/prepare-commit-msg.sample: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/.git/hooks/pre-push.sample: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/.git/hooks/pre-commit.sample: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/.git/hooks/update.sample: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/.git/config: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/.git/refs/heads/master: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/.git/refs/remotes/origin/HEAD: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/docs/top.html: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/docs/Makefile: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/docs/kraken.css: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/docs/head.html: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/docs/bar-bg.png: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/docs/MANUAL.markdown: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/docs/MANUAL.html: No such file or directory
diff: github/kraken-1.0/jhu/kraken-1.0/install_kraken.sh: No such file or directory
$